Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00203 ATGGACGGTGGAGCGCAGTACAACCCTCGTACCGTCGAAGAGGTTTTCAGGGACTTCAAGGGTCGTAGGGCTGCCATGATCAAGGCTCTCACTACTGATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGAAAAGGATAATCTTTGTCTGTACGGGTTCCCCAATGAACAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCCGAACTTCCCGAACCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCCGTTCACGGCGATGCATGGTTACTTGCCGTGGCTTTCTACTTCGGGGCAAGATTTGGTTTTGATAAATCTGACAGGAAACGGCTGTTCACTATGATTAATGATCTACCAACAATATTTGAGGTTGTGACTGGAGCTGAAAAGAAACAGGCTAAGGAAAAGTCATCTGTCTCAAACATCACCAGCACCAAATCAAAGTCCAGTTCAAAAGGGGTAAAAGAAAAAAAGTATTCGAAGCAAACAAAGGATGAGGATGAGGGATTGGATGAAGAAGATGAGGAGGAGCATGGGGAGACCTTGTGTGGTGCATGTGGGGAGAACTACGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCCAGGGCCGAGCACATTAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAACACGGCCTTGA 747 0.4672 MDGGAQYNPRTVEEVFRDFKGRRAAMIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHGDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGAEKKQAKEKSSVSNITSTKSKSSSKGVKEKKYSKQTKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRTRP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00203 248 PANTHER CPG BINDING PROTEIN 8 247 IPR045104 GO:0006355|GO:0042393
Gabi2179g00203 248 Pfam PHD-finger 195 244 IPR019787 -
Gabi2179g00203 248 SUPERFAMILY FYVE/PHD zinc finger 184 245 IPR011011 -
Gabi2179g00203 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 243 IPR013083 -
Gabi2179g00203 248 ProSitePatterns Zinc finger PHD-type signature. 195 241 IPR019786 -
Gabi2179g00203 248 MobiDBLite consensus disorder prediction 162 178 - -
Gabi2179g00203 248 SMART PHD_3 194 242 IPR001965 -
Gabi2179g00203 248 FunFam PHD finger alfin-like protein 187 243 - -
Gabi2179g00203 248 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi2179g00203 248 CDD PHD_AL_plant 194 244 IPR044104 -
Gabi2179g00203 248 MobiDBLite consensus disorder prediction 147 188 - -
Gabi2179g00203 248 ProSiteProfiles Zinc finger PHD-type profile. 192 244 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00203 Gabi-Chr2179 1975105 1977791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00203 1 247 Alfin-like Transcription Factor Family AT3G42790 76.096 5.14e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2179g00203 Alfin 1.8e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00203 K26274 - gmx:100500110 429.869