Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00202 ATGGACGGTGGAGCGCAGTACAACCCTCGTACCGTCGAAGAGGTTTTCAGGGACTTCAAGGGTCGTAGGGCTGCCATGATCAAGGCTCTCACTACTGATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGAAAAGGATAATCTTTGTCTGTACGGGTTCCCCAATGAACAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCCGAACTTCCCGAACCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCCGTTCACGGCGATGCATGGTTACTTGCCGTGGCTTTCTACTTCGGGGCAAGATTTGGTTTTGATAAATCTGACAGGAAACGGCTGTTCACTATGATTAATGATCTACCAACAATATTTGAGGTTGTGACTGGAGCTGAAAAGAAACAGGCTAAGGAAAAGTCATCTGTCTCAAACATCACCAGCACCAAATCAAAGTCCAGTTCAAAAGGGGTAAAAGAAAAATATTCGAAGCAAACAAAGGATGAGGATGAGGGATTGGATGAAGAAGATGAGGAGGAGCATGGGGAGACCTTGTGTGGTGCATGTGGGGAGAACTACGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCCAGGGCCGAGCACATTAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAACACGGCCTTGA 744 0.4677 MDGGAQYNPRTVEEVFRDFKGRRAAMIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHGDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGAEKKQAKEKSSVSNITSTKSKSSSKGVKEKYSKQTKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRTRP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00202 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 242 IPR013083 -
Gabi2179g00202 247 SUPERFAMILY FYVE/PHD zinc finger 183 244 IPR011011 -
Gabi2179g00202 247 CDD PHD_AL_plant 193 243 IPR044104 -
Gabi2179g00202 247 SMART PHD_3 193 241 IPR001965 -
Gabi2179g00202 247 MobiDBLite consensus disorder prediction 147 187 - -
Gabi2179g00202 247 MobiDBLite consensus disorder prediction 162 177 - -
Gabi2179g00202 247 ProSitePatterns Zinc finger PHD-type signature. 194 240 IPR019786 -
Gabi2179g00202 247 PANTHER CPG BINDING PROTEIN 8 246 IPR045104 GO:0006355|GO:0042393
Gabi2179g00202 247 Pfam PHD-finger 194 243 IPR019787 -
Gabi2179g00202 247 ProSiteProfiles Zinc finger PHD-type profile. 191 243 IPR019787 -
Gabi2179g00202 247 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi2179g00202 247 FunFam PHD finger alfin-like protein 186 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00202 Gabi-Chr2179 1975105 1977791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00202 1 246 Alfin-like Transcription Factor Family AT3G42790 75.299 4.28e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2179g00202 Alfin 1.8e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00202 K26274 - cpap:110817645 431.024