Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00200 ATGGACGGTGGAGCGCAGTACAACCCTCGTACCGTCGAAGAGGTTTTCAGGGACTTCAAGGGTCGTAGGGCTGCCATGATCAAGGCTCTCACTACTGATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGAAAAGGATAATCTTTGTCTGTACGGGTTCCCCAATGAACAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCCGAACTTCCCGAACCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCCGTTCACGGCGATGCATGGTTACTTGCCGTGGCTTTCTACTTCGGGGCAAGATTTGGTTTTGATAAATCTGACAGGAAACGGCTGTTCACTATGATTAATGATCTACCAACAATATTTGAGGTTGTGACTGGAGCTGAAAAGAAACAGGCTAAGGAAAAGTCATCTGTCTCAAACATCACCAGCACCAAATCAAAGTCCAGTTCAAAAGGGCGAGGATCTGAACCAGAGAAGTATTCGAAGCAAACAAAGGATGAGGATGAGGGATTGGATGAAGAAGATGAGGAGGAGCATGGGGAGACCTTGTGTGGTGCATGTGGGGAGAACTACGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCCAGGGCCGAGCACATTAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAACACGGCCTTGA 753 0.4741 MDGGAQYNPRTVEEVFRDFKGRRAAMIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHGDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGAEKKQAKEKSSVSNITSTKSKSSSKGRGSEPEKYSKQTKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRTRP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00200 250 SUPERFAMILY FYVE/PHD zinc finger 186 247 IPR011011 -
Gabi2179g00200 250 PANTHER CPG BINDING PROTEIN 8 249 IPR045104 GO:0006355|GO:0042393
Gabi2179g00200 250 MobiDBLite consensus disorder prediction 149 163 - -
Gabi2179g00200 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Gabi2179g00200 250 SMART PHD_3 196 244 IPR001965 -
Gabi2179g00200 250 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi2179g00200 250 MobiDBLite consensus disorder prediction 145 189 - -
Gabi2179g00200 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Gabi2179g00200 250 FunFam PHD finger alfin-like protein 189 245 - -
Gabi2179g00200 250 MobiDBLite consensus disorder prediction 164 180 - -
Gabi2179g00200 250 Pfam PHD-finger 197 246 IPR019787 -
Gabi2179g00200 250 CDD PHD_AL_plant 196 246 IPR044104 -
Gabi2179g00200 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 245 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00200 Gabi-Chr2179 1975105 1977791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00200 1 249 Alfin-like Transcription Factor Family AT3G42790 76.096 5.77e-125 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2179g00200 Alfin 1.8e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00200 K26274 - cpap:110817645 444.506