Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00199 ATGGACGGTGGAGCGCAGTACAACCCTCGTACCGTCGAAGAGGTTTTCAGGGACTTCAAGGGTCGTAGGGCTGCCATGATCAAGGCTCTCACTACTGATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGAAAAGGATAATCTTTGTCTGTACGGGTTCCCCAATGAACAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCCGAACTTCCCGAACCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCCGTTCACGGCGATGCATGGTTACTTGCCGTGGCTTTCTACTTCGGGGCAAGATTTGGTTTTGATAAATCTGACAGGAAACGGCTGTTCACTATGATTAATGATCTACCAACAATATTTGAGGTTGTGACTGGAGCTGAAAAGAAACAGGCTAAGGAAAAGTCATCTGTCTCAAACATCACCAGCACCAAATCAAAGTCCAGTTCAAAAGGGAAGTATTCGAAGCAAACAAAGGATGAGGATGAGGGATTGGATGAAGAAGATGAGGAGGAGCATGGGGAGACCTTGTGTGGTGCATGTGGGGAGAACTACGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCCAGGGCCGAGCACATTAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAACACGGCCTTGA 735 0.4721 MDGGAQYNPRTVEEVFRDFKGRRAAMIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHGDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGAEKKQAKEKSSVSNITSTKSKSSSKGKYSKQTKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRTRP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00199 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 239 IPR013083 -
Gabi2179g00199 244 ProSitePatterns Zinc finger PHD-type signature. 191 237 IPR019786 -
Gabi2179g00199 244 Pfam PHD-finger 191 240 IPR019787 -
Gabi2179g00199 244 ProSiteProfiles Zinc finger PHD-type profile. 188 240 IPR019787 -
Gabi2179g00199 244 MobiDBLite consensus disorder prediction 145 184 - -
Gabi2179g00199 244 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi2179g00199 244 FunFam PHD finger alfin-like protein 183 239 - -
Gabi2179g00199 244 CDD PHD_AL_plant 190 240 IPR044104 -
Gabi2179g00199 244 PANTHER CPG BINDING PROTEIN 8 243 IPR045104 GO:0006355|GO:0042393
Gabi2179g00199 244 SMART PHD_3 190 238 IPR001965 -
Gabi2179g00199 244 MobiDBLite consensus disorder prediction 149 164 - -
Gabi2179g00199 244 SUPERFAMILY FYVE/PHD zinc finger 180 241 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00199 Gabi-Chr2179 1975105 1977791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00199 1 243 Alfin-like Transcription Factor Family AT3G42790 75.299 2.87e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2179g00199 Alfin 1.7e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00199 K26274 - cpap:110817645 431.409