Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00198 ATGGACGGTGGAGCGCAGTACAACCCTCGTACCGTCGAAGAGGTTTTCAGGGACTTCAAGGGTCGTAGGGCTGCCATGATCAAGGCTCTCACTACTGATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGAAAAGGATAATCTTTGTCTGTACGGGTTCCCCAATGAACAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCCGAACTTCCCGAACCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCCGTTCACGGCGATGCATGGTTACTTGCCGTGGCTTTCTACTTCGGGGCAAGATTTGGTTTTGATAAATCTGACAGGAAACGGCTGTTCACTATGATTAATGATCTACCAACAATATTTGAGGTTGTGACTGGAGCTGAAAAGAAACAGGCTAAGGAAAAGTCATCTGTCTCAAACATCACCAGCACCAAATCAAAGTCCAGTTCAAAAGGGCAAACAAAGGATGAGGATGAGGGATTGGATGAAGAAGATGAGGAGGAGCATGGGGAGACCTTGTGTGGTGCATGTGGGGAGAACTACGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCCAGGGCCGAGCACATTAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAACACGGCCTTGA 723 0.4744 MDGGAQYNPRTVEEVFRDFKGRRAAMIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHGDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGAEKKQAKEKSSVSNITSTKSKSSSKGQTKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRTRP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00198 240 Pfam PHD-finger 187 236 IPR019787 -
Gabi2179g00198 240 FunFam PHD finger alfin-like protein 179 235 - -
Gabi2179g00198 240 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Gabi2179g00198 240 PANTHER CPG BINDING PROTEIN 8 239 IPR045104 GO:0006355|GO:0042393
Gabi2179g00198 240 SMART PHD_3 186 234 IPR001965 -
Gabi2179g00198 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 235 IPR013083 -
Gabi2179g00198 240 MobiDBLite consensus disorder prediction 145 180 - -
Gabi2179g00198 240 CDD PHD_AL_plant 186 236 IPR044104 -
Gabi2179g00198 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Gabi2179g00198 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Gabi2179g00198 240 SUPERFAMILY FYVE/PHD zinc finger 176 237 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00198 Gabi-Chr2179 1975105 1977791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00198 1 239 Alfin-like Transcription Factor Family AT3G42790 71.315 9.19e-122 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2179g00198 Alfin 1.7e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00198 K26274 - cpap:110817645 436.032