Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2179g00191 | ATGGTTTGGTTTCAATGTGAAGATTGTGGAGACAACCTCAAAAAGCCCAAGTTGTCGAGTCACTTCCGAACTTGCTCCGCTCACAAGTTGTCGTGCATTGACTGTGGGCAAATATTTGGGCGTGACACCGTTCAGGAACACACACAGTGTATTACAGAAGCGGAAAAGTATGGTCCAAAAGGCCAAGGCAAAACTTTGAATGTTTCAACTGCCAAGCCTAACAAGGATAGCAAGCAAAGGCCTGAAGTTGATATTAATGTGGGGTTATCTGAACGGCCTCCATGGTTCTGTAGTCTTTGCAATACGAAAGCTACAAGTAAGCAAACACTGCTTCTCCATGCTGATGGAAAGAAACACAAGGCAAAAGCCCGAGCATTCCATGCTTCAAAGCAACAACCTGGCGAGACCAACATATCTGCCCCTGATGCTAAGGTTGCGATGGAGACTGTTCCTAATAATGAGGAGGGAGATGACGAAAATGCAGAGCAGCTAAGATTGCAAGAGTCTTCTAAACAAAATAACTTGAAATCAGGAAGTGAAATTTCTTCAGCAAAGAAAAAGAGAAAACTTGGAGCCTTGGAGGATGACCTTGTTAAAAAAAGCAGGAATGACACTTCAGTTGACATGGGAAATGGGGAAGTAATTCAGGGTGAAGAAGCAGAAGCAACAGGAGAGAGCGATTCGAAGAAAGAAGGGATAGTAGAACCTCACTGTACGAGTGCAGTAAAAAATAAAATAAAATGGAAGAAGTTTATCAAATCGGCCTTGAAATCTCATCCTGATGGAATTTTGAAGATGAAGAAACTCAGGAAAGTTGTCCTCACAGCACTGCTGGAATCTGGCATTGTAGTGGATGAAACTGAATTAAGTGAGGCACTTCAGCACAAGATCAATTCCAGCTCCAGATTTGCAGTTGAGAACAAGTATGTGCGATTGGTGGCCAAAGATTGA | 951 | 0.428 | MVWFQCEDCGDNLKKPKLSSHFRTCSAHKLSCIDCGQIFGRDTVQEHTQCITEAEKYGPKGQGKTLNVSTAKPNKDSKQRPEVDINVGLSERPPWFCSLCNTKATSKQTLLLHADGKKHKAKARAFHASKQQPGETNISAPDAKVAMETVPNNEEGDDENAEQLRLQESSKQNNLKSGSEISSAKKKRKLGALEDDLVKKSRNDTSVDMGNGEVIQGEEAEATGESDSKKEGIVEPHCTSAVKNKIKWKKFIKSALKSHPDGILKMKKLRKVVLTALLESGIVVDETELSEALQHKINSSSRFAVENKYVRLVAKD | 316 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2179g00191 | 316 | SUPERFAMILY | beta-beta-alpha zinc fingers | 84 | 128 | IPR036236 | - | |
| Gabi2179g00191 | 316 | Pfam | LYAR-type C2HC zinc finger | 30 | 57 | IPR014898 | - | |
| Gabi2179g00191 | 316 | MobiDBLite | consensus disorder prediction | 168 | 232 | - | - | |
| Gabi2179g00191 | 316 | FunFam | UBP1-associated proteins 1C | 89 | 132 | - | - | |
| Gabi2179g00191 | 316 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 1 | 26 | - | - | |
| Gabi2179g00191 | 316 | SMART | ZnF_U1_5 | 92 | 126 | IPR003604 | GO:0003676|GO:0008270 | |
| Gabi2179g00191 | 316 | FunFam | cell growth-regulating nucleolar protein-like | 1 | 50 | - | - | |
| Gabi2179g00191 | 316 | Gene3D | Classic Zinc Finger | 71 | 125 | - | - | |
| Gabi2179g00191 | 316 | Gene3D | - | 1 | 50 | - | - | |
| Gabi2179g00191 | 316 | SUPERFAMILY | beta-beta-alpha zinc fingers | 30 | 58 | IPR036236 | - | |
| Gabi2179g00191 | 316 | MobiDBLite | consensus disorder prediction | 181 | 203 | - | - | |
| Gabi2179g00191 | 316 | Pfam | Zinc-finger of C2H2 type | 95 | 119 | - | - | |
| Gabi2179g00191 | 316 | MobiDBLite | consensus disorder prediction | 61 | 81 | - | - | |
| Gabi2179g00191 | 316 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1 | 26 | IPR036236 | - | |
| Gabi2179g00191 | 316 | PANTHER | CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR | 1 | 313 | IPR039999 | GO:0003677 | |
| Gabi2179g00191 | 316 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 27 | 51 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2179g00191 | 69 | 229 | C2H2 Transcription Factor Family | AT2G19380 | 39.506 | 2.57e-19 | 86.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2179g00191 | K15263 | - | gmx:100790272 | 496.893 |