Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00180 ATGTCCTCACCGAGATCGGTTGCTGTTGCCGTCAGTGGAGGCTCCGGCGCCGCCAAGGGTAGTCGGCGAGCTGTCCAGTGGGCGGTGGGGAATCTCTTCCCTCAAGCCGATAGGTTCATCTTAGTCCACGTCATCCCCAGAATCACTTCAATTGCAACCCCAACTGGAGAGTATGTTTCCATTTCCGAAGCAGATGCCAATGGCTTTGCAGCTTATGTGCAGGATGTGAAACAAAAGTCTGAACAAATCTTTGTTCCATTCAAGAAACTCTGTGATACAAACATGATGGAAACCTTGCTGCTAGAAGATGACAATCCTGCAAATGCACTTCTTAGCTTTATCTCAGAGTCTGGGGTCCAAATATTAGTGATGGGTTCTTACACCTCAAATTTTATTACAAGGAAGCTAAAAGGACCTGGGGTACCATCAACGATTCTAAGATGTGCTCCTGAAAGCTGTGATGTATATGTGGTAGCTAGAGATAGAATTATATCAAAGTTAGCTGATTCTTCATCTTCACATTCTCATGCAGAGGCGAGCCCAAGATACTTCATGTCTGCTCAAGTAAATAATGCAGACAATGGTACTGGCATTGGTAGAGAAATGTCTGGAATTAATTCATCCTCAACAGAACCTAAAATTCTAAAAAATTTCAGATTTTTATCAATATCAGAGCGTAGTTACATTGGTTTGCAAACATCTAGTCGCAGGGATTCTTTTGAACATTCTATCAGAAATGAAGAAGAAAATGCAGAGAACTGTGGAGATGATGTTGAAACTATGAGCCTCCACTCATTTGATTCCATAGCTTCTGCACACCGTGAACAGTTAGTCATGCAAGAAGAAGTAGAACGGCTCCAGCTGGAGTTGCAGAATACTATTGCCATGTACAAACAGGTTTGTGAAGACCTGGTTCATGCTCAAAGCAAGGCCCTTGTACTTTCTTCTGAATCTCTTGAAGAAGCTAAAATAGTAAATGCTTCCCTGAAAAGAGAGGAGATTTTGAGAAAGATTGCTGCTGAAGAGAAAGAAAAGTATTTTAAAGTCACGAAGGAACTTGAGGAGGCAAAAAGTAGACTTGCCAAAGAGTCATACGAAAGACAGATAGCTGAACTTAATGTCCTTAAAGAATCCATAGAAAAACAGAGAATTGTTGATACGTTGCTCTCAAATGACAGGAGATACAGACAGTACACCATGAATGAAATCAAGATAGCGACAAACTTCTTCTCTGAGGATTTGGTAATTGGTGAAGGAGGATATGGGAAAGTTTACAAATGCAATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCATCAGGACGCATTCAACAAGAAAGAGGAGTTTCTGAAAGAGGTTGAGATTCTTAGTCAGCTACATCATCCAAATATGGTTTTGTTACTGGGAGCATGTCCTGAGAGTGGTTGCCTTGTTTATGAATACCTGGAAAATGGAAGTCTAGAAGACTATCTTCTCAGTAAAAATGGAAAACCACAACTTCCTTGGTTTTTTCGATTCCGTATAGCTTTTGAAATGGCTTGTGGACTCTCATTCTTGCATAATTCGAAGCCAGAGCCTATTGTTCATCGAGATATAAAACCTGGCAATATCTTGTTAGACAGAAATTATGTGAGCAAAATTGCAGATGTTGGGTTGGCTAAGCTCCTTTCAGACGTTGTGCCTGACAATATTACAGAGTACAGAGAATCGATGCTAGCTGGTACCCTGCACTACATGGACCCAGAGTATCAGAGAACTGGCACTGTCCGACCAAAATCAGATGTATATGCTTTTGGAGTTATAGCTCTCCAATTGATAACTGCTCGCCATGCACGTGGACTCATTTTGACTGTTGAAGATGCAATTACAAAGGGCTCCTTCCGTGATATTTTAGACAAATCAGCTGGAGATTGGCCAATGGATGAGACATTGGAATTGGCTCAAATTGCCCTTAACTGCGTTGCACTTAGATGCAGAGATAGACCAGAACTTGATACTGAAGTTCTTCCACTACTCAAAAGACTTTCTGATGTGGCAAATGCCACTGCAAAGATAGGAAGAAATACTACAAGCACGCCAAGTCAGTATTATTGTCCAATCGTGCAGGAAGTCATGGATGATCCACATATTGCTGCGGACGGTTTCACTTATGAGTACAGAGCAATCAAGGCATGGCTCAACAAGCACAATGTGTCCCCCGTGACAAAGCTTAAACTCCAGCATTCTGTGTTGACTCCAAACCATACTTTACGTTCGGCCATTCAGGAATGGAAGTCAGGAGTCTTATTTGATTAG 2298 0.4169 MSSPRSVAVAVSGGSGAAKGSRRAVQWAVGNLFPQADRFILVHVIPRITSIATPTGEYVSISEADANGFAAYVQDVKQKSEQIFVPFKKLCDTNMMETLLLEDDNPANALLSFISESGVQILVMGSYTSNFITRKLKGPGVPSTILRCAPESCDVYVVARDRIISKLADSSSSHSHAEASPRYFMSAQVNNADNGTGIGREMSGINSSSTEPKILKNFRFLSISERSYIGLQTSSRRDSFEHSIRNEEENAENCGDDVETMSLHSFDSIASAHREQLVMQEEVERLQLELQNTIAMYKQVCEDLVHAQSKALVLSSESLEEAKIVNASLKREEILRKIAAEEKEKYFKVTKELEEAKSRLAKESYERQIAELNVLKESIEKQRIVDTLLSNDRRYRQYTMNEIKIATNFFSEDLVIGEGGYGKVYKCNLDHTPVAVKVLHQDAFNKKEEFLKEVEILSQLHHPNMVLLLGACPESGCLVYEYLENGSLEDYLLSKNGKPQLPWFFRFRIAFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKIADVGLAKLLSDVVPDNITEYRESMLAGTLHYMDPEYQRTGTVRPKSDVYAFGVIALQLITARHARGLILTVEDAITKGSFRDILDKSAGDWPMDETLELAQIALNCVALRCRDRPELDTEVLPLLKRLSDVANATAKIGRNTTSTPSQYYCPIVQEVMDDPHIAADGFTYEYRAIKAWLNKHNVSPVTKLKLQHSVLTPNHTLRSAIQEWKSGVLFD 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00180 765 Gene3D Phosphorylase Kinase; domain 1 389 482 - -
Gabi2179g00180 765 ProSiteProfiles U-box domain profile. 692 765 IPR003613 GO:0004842|GO:0016567
Gabi2179g00180 765 CDD STK_N 6 160 - -
Gabi2179g00180 765 Coils Coil 269 289 - -
Gabi2179g00180 765 ProSitePatterns Protein kinases ATP-binding region signature. 416 437 IPR017441 GO:0005524
Gabi2179g00180 765 Pfam Protein tyrosine and serine/threonine kinase 415 666 IPR001245 GO:0004672|GO:0006468
Gabi2179g00180 765 SMART serkin_6 410 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2179g00180 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 693 762 IPR013083 -
Gabi2179g00180 765 PANTHER OS02G0152300 PROTEIN 7 757 - -
Gabi2179g00180 765 SMART Ubox_2 696 758 IPR003613 GO:0004842|GO:0016567
Gabi2179g00180 765 SUPERFAMILY Protein kinase-like (PK-like) 393 665 IPR011009 -
Gabi2179g00180 765 SUPERFAMILY RING/U-box 687 759 - -
Gabi2179g00180 765 Pfam U-box domain 694 759 IPR003613 GO:0004842|GO:0016567
Gabi2179g00180 765 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 4 158 - -
Gabi2179g00180 765 Coils Coil 324 382 - -
Gabi2179g00180 765 CDD RING-Ubox_WDSUB1-like 694 748 - -
Gabi2179g00180 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Gabi2179g00180 765 ProSiteProfiles Protein kinase domain profile. 410 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2179g00180 765 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 382 482 - -
Gabi2179g00180 765 Gene3D Transferase(Phosphotransferase) domain 1 483 692 - -
Gabi2179g00180 765 Gene3D HUPs 5 158 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00180 Gabi-Chr2179 1839994 1844944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00180 6 765 Plant U-box Gene Family AT5G57035 53.816 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi2179g00180 PK_Tyr_Ser-Thr 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00180 - - gmx:100805896 1264.21