Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00175 ATGAAAGGGACATTGCAAAATGTCAAATTTGAACGTTCAATTCGAGTTTTTGAAAGTTTTGATTCTATGGGCTTGCAAGAGAATCTCCTCAGAGGCATTTATGCATATGGTTTTGAAAAACCATCTGCCATTCAGCAAAGGGGAATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAGTCTGGAACTGGGAAGACAGCAACTTTCTGCTCTGGTATTCTGCAGCAACTGGACTACAATGTGACACAATGCCAGGCCTTGGTTTTGGCACCAACTCGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGGGCGCTTGGAGATTATCTAGGTGTGAAAGTTCATGCTTGTGTGGGAGGTACTAGTGTTCGTGAAGACCAACGTATTCTATCAAGTGGTGTTCATGTTGTGGTTGGTACTCCTGGCCGTGTGTTTGATATGCTGCGCAGGCAGTCACTTCAGCCAGATTACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTTAAAGATCAGATCTATGATATATTCCAGCTGCTGCCTTCTAAGATTCAAGTGGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCCCTTGAGATCACCCGGAAGTTCATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGCATAAAGCAGTTTTATGTCAATGTTGACAAAGAGGATTGGAAGCTGGACACACTCTGTGATCTTTATGAGACTTTAGCCATTACTCAGAGTGTCATTTTTGTAAACACCAGAAGGAAAGTTGATTGGTTAACTGACAAGATGCGAGGCCGTGATCACACAGTGTCGGCAACCCATGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGATCTGGGTCTTCTCGTGTTTTGATTACTACTGATCTTTTGGCTCGTGGTATTGATGTCCAACAAGTGTCTCTAGTTATAAATTATGATCTCCCTACACAGCCTGAGAACTATCTCCATCGTATTGGTCGAAGTGGGAGGTTTGGTAGGAAAGGTGTTGCTATCAACTTTGTCACTAGGGATGATGAAAAAATGCTGTATGACATCCAGAAGTTTTATAATGTGGTAGTCGAGGAGCTGCCATCAAATGTTGCTGAGCTTCTCTGA 1176 0.4388 MKGTLQNVKFERSIRVFESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYNVTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLQPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDEKMLYDIQKFYNVVVEELPSNVAELL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00175 391 Gene3D - 8 226 IPR027417 -
Gabi2179g00175 391 Pfam Helicase conserved C-terminal domain 244 352 IPR001650 -
Gabi2179g00175 391 FunFam Eukaryotic initiation factor 4A-III 226 391 - -
Gabi2179g00175 391 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 230 391 IPR001650 -
Gabi2179g00175 391 CDD SF2_C_DEAD 231 361 - -
Gabi2179g00175 391 Gene3D - 227 391 IPR027417 -
Gabi2179g00175 391 Pfam DEAD/DEAH box helicase 43 204 IPR011545 GO:0003676|GO:0005524
Gabi2179g00175 391 FunFam Eukaryotic initiation factor 4A-II 6 225 - -
Gabi2179g00175 391 SMART ultradead3 37 234 IPR014001 -
Gabi2179g00175 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 372 IPR027417 -
Gabi2179g00175 391 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 165 173 IPR000629 -
Gabi2179g00175 391 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Gabi2179g00175 391 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 219 IPR014001 -
Gabi2179g00175 391 CDD DEADc_EIF4A 23 220 - -
Gabi2179g00175 391 SMART helicmild6 271 352 IPR001650 -
Gabi2179g00175 391 PANTHER RNA HELICASE 17 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00175 Gabi-Chr2179 1802946 1809458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00175 16 391 Eukaryotic Initiation Factors Gene Family AT1G72730 91.223 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00175 K03257 - gmx:100786735 727.628