Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00167 ATGGAACCTCGTGTAGGGAATAAGTTTCGGCTCGGCCGGAAGATCGGTGGCGGCTCGTTTGGCGAGATCTATTTAGGTACTAATATTCAAACTAACGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTACGAGTCCAAGTTGTACAGAATTCTCCAGGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGGGTGGAAGGAGATTACAATGTTCTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTCTGTAGTAGAAAACTATCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTTATTCATTCTAAATCATTTCTACACCGGGATATCAAACCGGATAATTTTCTGATGGGATTAGGAAGGCGTGCAAACCAGGTTTATGCTATTGATTTTGGTTTGGCTAAGAAATACAGAGATAGTTCAACCCATCAACACATTCCTTACAGGGAAAATAAGAATTTGACTGGAACCGCAAGATATGCTAGCATGAATACTCATCTTGGCATCGAGCAAAGCCGAAGAGATGATTTGGAGTCTCTTGGTTATGTTTTGATGTACTTCCTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCAGGAACCAAGAAACAGAAGTACGAGAGAATCAGTGAAAAGAAGGTTTCTACCTCGATTGAAGCCTTGTGTCGAGGTTATCCAACAGAATTTGCATCATACTTCCATTACTGCCGCTCATTGAGGTTTGATGATAAGCCAGATTATGCTTACCTCAAAAGGATATTTCGTGACCTATTTATTCGTGAAGGATTCCAGTTTGACTATGTTTTTGATTGGACCATTTTGAAGTATCAGCAATCACAGCTGGCCACTCCTCCAGCACGAGCCATTGGTCCTAGTGCTGCAACCAGTTCTGGAATGCCACCGGCTGTTACTAATGCTGATAGACATACAGGAGGGGAAGAAGGGCGACCTCCTGGTTTGATTTCTGTGGATTCGAGACGAAGAATGTCAGGGCCCATTTTAAATTCTTTATCAACTGCCAATATCTTGGGTCAGTCAAGTGGATCTTCAAGGCGAGTTGCTGCTTCTAGTAGCCGTGATGCATTTGCAGGTGCCGAGTCAGATGTTCGTACTCGTACTGCTGAGGCTAGCTCCAGAATTTTGAGCGGGCAAAGAAGTTCACCAATTGGATCTTCTGATCCTCCCAAGAGAGTATCATCTGGGAGAAATGCTTCTCATGTAAAAAATTATGACTCTGCCCTTAAGGGCATGGAGGGTTTGCAGTTAGAGAATGATGAGAGGGTCCATTATTGA 1350 0.4296 MEPRVGNKFRLGRKIGGGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPARAIGPSAATSSGMPPAVTNADRHTGGEEGRPPGLISVDSRRRMSGPILNSLSTANILGQSSGSSRRVAASSSRDAFAGAESDVRTRTAEASSRILSGQRSSPIGSSDPPKRVSSGRNASHVKNYDSALKGMEGLQLENDERVHY 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00167 449 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gabi2179g00167 449 CDD STKc_CK1_delta_epsilon 8 282 - -
Gabi2179g00167 449 Gene3D Transferase(Phosphotransferase) domain 1 1 315 - -
Gabi2179g00167 449 MobiDBLite consensus disorder prediction 393 426 - -
Gabi2179g00167 449 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Gabi2179g00167 449 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2179g00167 449 MobiDBLite consensus disorder prediction 364 449 - -
Gabi2179g00167 449 FunFam Putative Casein kinase I 1 85 - -
Gabi2179g00167 449 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2179g00167 449 FunFam Casein kinase I isoform delta-like 1 308 - -
Gabi2179g00167 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gabi2179g00167 449 MobiDBLite consensus disorder prediction 305 344 - -
Gabi2179g00167 449 PANTHER CASEIN KINASE-RELATED 9 398 - -
Gabi2179g00167 449 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00167 Gabi-Chr2179 1770033 1777826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00167 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.19e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi2179g00167 Pkinase 5.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00167 K02218 - gmx:100785851 839.336