Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00165 ATGGTGGTTGCTCCCGGCGGCGGCGACGGTGGCTCCTTCTCTGCGATGGAAGCCTTGGGAGAGGAAATAGCGAGAGTGAAATCAGAGCTATTCGATGACAGTTCTCGTTCTAATAATTCTGGTGGCTCTTCCTGTGAAGGCGATCGATACGACGACGGTTTGAGTGAAAGGATGGAGTCAGGAGTGACGGGAGAAGAGGTTCATATCAAAGAAGAGGTTGATGACGGCGGCGTTAATGGATCTTCGACGTCTTCTTCGTCGATCGAATTGCCGAAACCAATGGAAGGGTTGAACGATGTGGGTCCACCACCCTTCCTTAGAAAAACCTTCGAAATGGTGGAGGACCACGACACCGACCCCATCGTGTCATGGAGCGAAGCTCGTGATAGCTTCATCGTTTGGGACTCTCACGAATTCTCCAAAATCCTTCTCCCCAAGTACTTCAAGCACAGCAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAGGTTGATTCAGATCGTTGGGAGTTTGCAAATGAAGGATTCCGGGGAGGGAAGAAGCATTTGCTGAAGAACATTAGGAGGAGAAGTAAGTATAACAAATTTCATCAGGGAGCATTCAATTCGATGAATCCTGGCCTGGAGGCTGAGGTGGAGAAATTGAAGAAGGACCAGAACATATTGAAAGTGGAGATTCTGAAGCTTAGGCAGCAGCAGGAGAATTCGCATGTTCAAGTCACGAATGTTCAGGAGCGAATTCGGTGTGCAGAGTTGAAGCAGTATCAGATGATCTTTTTCCTCACCAGAATGGCTAGAAGGCCAGCCTTTTTTGAGCAGTTCATTCAAAAGATTAAGCGAAAGAGAGAGATTGATGGTGCTGACATGGTTAAGAGGCGTAGATTGCTTGGAACCGAGGGCCCTTTAAGCTTCCCTAAGGTAATGGAAACAAAACCTGATGTTGATTATAGATGCCAAGGTTATGAACAGTTCAATACATTGCAATCAGAACTCAATGGACTATTGTCTGAAACCGTGAACACCAGTAGAATGGAGACCCCATCTCCCTCTCCCAATGAATTATGCAGCTCTGTACAAGGCTTGAGGCCGGGCTATGGTTCTAGACCAAGTGCGCAAGATGTATCTTCTGCTTATGATGTTATGTCAGAAAAACTACTGGAGGAAAATTCTGTTGTTGATGAAGAACTAGATGTGAATGACTCAAATATCTATCTTGAATTAGAGGATTTGATAAGTAAGCCAGCAGATTGGGTTGGATCTGCAAGTGGATTGGTGGGGCAAACTAGTTGA 1302 0.4601 MVVAPGGGDGGSFSAMEALGEEIARVKSELFDDSSRSNNSGGSSCEGDRYDDGLSERMESGVTGEEVHIKEEVDDGGVNGSSTSSSSIELPKPMEGLNDVGPPPFLRKTFEMVEDHDTDPIVSWSEARDSFIVWDSHEFSKILLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFRGGKKHLLKNIRRRSKYNKFHQGAFNSMNPGLEAEVEKLKKDQNILKVEILKLRQQQENSHVQVTNVQERIRCAELKQYQMIFFLTRMARRPAFFEQFIQKIKRKREIDGADMVKRRRLLGTEGPLSFPKVMETKPDVDYRCQGYEQFNTLQSELNGLLSETVNTSRMETPSPSPNELCSSVQGLRPGYGSRPSAQDVSSAYDVMSEKLLEENSVVDEELDVNDSNIYLELEDLISKPADWVGSASGLVGQTS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00165 433 MobiDBLite consensus disorder prediction 28 99 - -
Gabi2179g00165 433 MobiDBLite consensus disorder prediction 49 75 - -
Gabi2179g00165 433 SUPERFAMILY "Winged helix" DNA-binding domain 101 194 IPR036390 -
Gabi2179g00165 433 Coils Coil 216 236 - -
Gabi2179g00165 433 Pfam HSF-type DNA-binding 105 194 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2179g00165 433 PRINTS Heat shock factor (HSF) domain signature 105 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2179g00165 433 PRINTS Heat shock factor (HSF) domain signature 156 168 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2179g00165 433 PRINTS Heat shock factor (HSF) domain signature 143 155 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2179g00165 433 MobiDBLite consensus disorder prediction 77 91 - -
Gabi2179g00165 433 Gene3D - 98 195 IPR036388 -
Gabi2179g00165 433 SMART hsfneu3 101 194 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2179g00165 433 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 91 321 IPR027725 -
Gabi2179g00165 433 FunFam Heat shock transcription factor 1 98 195 - -
Gabi2179g00165 433 ProSitePatterns HSF-type DNA-binding domain signature. 144 168 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00165 Gabi-Chr2179 1755943 1757953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00165 91 302 HSF AT2G26150 55.251 6.86e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi2179g00165 HSF_DNA-bind 8.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00165 K09419 - gmx:100818430 585.489