Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00158 ATGGATGACGTCTTCTCCCTCCCCGAAGTCGCCAGAACTGATTTTCTCCGCTCCTTAGTTCATTCTTTTGGCTGCGCTTACATTTGTTTGTGGCGATATGATTCCAATTTATCCAATCTTTTGTTCTTCTTGGATGGTTTCTACAACGTAATAAACAACCAACCAAGCTCATCTTTGGAGAGTAGTGTATCTGAAAGGCTTTTTAACCAATATCAGCGTTTAACCTTTGATGTCAATGATGACTGTGTTCCTGGACTAGCTTTCAGGAACCGCCTTCCCTATCTGGAGCTGCAACAATTGGATCTTCTAAGACTTGTATCGACAGAAACACAGACACAATTCTTTCAGGAAGCAAGGATTAAGACTGCTGTTTTTATGGGGTGCAACAAAGGGGAAATTGAGCTTGGGTTCTCGAATATATCTCCAGCTGACATTAAGACAGCACTTGGGAGTTTATTTCCAAAAGATATCTCCATACATTCCCAATCGATGGATCAGAATCCACCTTCATCATCTTCATCTTCTTTCATATCATTATCCACAGGTAGCCCAGAGTACTCATCCCTGTTGTTCAGTATTCCGGGCACTACTTCCCTGTCCCATTTTCCTGAAACCCTTGGTGTGGTTCCCACAATGCAACCTACTGTGCCAGCCTCACAAACTAGCCCACACCAACAAGCCATTCCAAGTCTTTTCCCCACACTAGAGGGTGAACATGATGCAATAATAAGAGCAATGCTTCATGTTATATCTTCACCACCTTCTTCAACTTCTCATCAGCATCAACCCCAGCAAAATTTGCCTTATACTTCAGTGATACATCCAGAAGCTACTGCTTTCAAGAGATATAGACCAAACATAACATCTCAATTGGGATTGATCAGTTTTCGGAGGCAAAGCCTGTTGAATAGATCATTTGCATTCTTTAGAAGATTAAATTTAACGAGAATGAGAGAACTCGTTCAAGCAACACATACCACTAGTGCACAGCTGCATCATATGATATCAGAGCGAAGAAGGCGTGAAAAACTCAATGAGAATTTTCAGACACTTAGAACACTGCTTCCTCCAGGAACTAAGAAAGACAAAGCTTCAATCCTTACAACAGCGAAGGAGACACTGAGCTCTTTGATGGCTGAAATTGAAAGGCTTAGCTCAAGAAATCAGCAGTTGATAACACTTTTGTCAGCCAAAGAAAGTACTATTAATGAAGAAAGCAAAGGTAGCTCCTCAAATGAAAGATTGCATGTTCGGGTTTCACATGTATTGGAATCTAGCTCATCAGAAGAGCAAATGGTGGACTTGCAAGTGATTGTGAGAGGAGAAAGTTCTCAAGTTGATATATTGATTCGCTTATTAGAATTCTTAAAGCGGGTTCAGAACGTGAGCTTGATTTCCACGGACGTAAACACTCATACTACAGAAGAGACAGCCATTAATCAATTAACCTTCCGGCTAAGGATTATTGAGGGAAGTGAATGGGACGAGTCTGCCTTCCAGGAAGCAGTTAGAAGAGTTGTTGCTGACCTGATACAATGGCAACTGGACCAATAG 1554 0.4151 MDDVFSLPEVARTDFLRSLVHSFGCAYICLWRYDSNLSNLLFFLDGFYNVINNQPSSSLESSVSERLFNQYQRLTFDVNDDCVPGLAFRNRLPYLELQQLDLLRLVSTETQTQFFQEARIKTAVFMGCNKGEIELGFSNISPADIKTALGSLFPKDISIHSQSMDQNPPSSSSSSFISLSTGSPEYSSLLFSIPGTTSLSHFPETLGVVPTMQPTVPASQTSPHQQAIPSLFPTLEGEHDAIIRAMLHVISSPPSSTSHQHQPQQNLPYTSVIHPEATAFKRYRPNITSQLGLISFRRQSLLNRSFAFFRRLNLTRMRELVQATHTTSAQLHHMISERRRREKLNENFQTLRTLLPPGTKKDKASILTTAKETLSSLMAEIERLSSRNQQLITLLSAKESTINEESKGSSSNERLHVRVSHVLESSSSEEQMVDLQVIVRGESSQVDILIRLLEFLKRVQNVSLISTDVNTHTTEETAINQLTFRLRIIEGSEWDESAFQEAVRRVVADLIQWQLDQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00158 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 394 IPR036638 GO:0046983
Gabi2179g00158 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
Gabi2179g00158 517 Coils Coil 367 394 - -
Gabi2179g00158 517 CDD bHLH_AtbHLH_like 333 385 IPR045239 -
Gabi2179g00158 517 Pfam Helix-loop-helix DNA-binding domain 332 377 IPR011598 GO:0046983
Gabi2179g00158 517 Gene3D - 327 403 IPR036638 GO:0046983
Gabi2179g00158 517 SMART finulus 334 383 IPR011598 GO:0046983
Gabi2179g00158 517 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 107 509 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00158 Gabi-Chr2179 1717463 1722054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00158 12 510 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.386 1.70e-101 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2179g00158 HLH 7.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00158 - - gmx:100798452 583.948