Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00146 ATGGCTCCTAGAATCCTACTATGCGGCGACGTTTTGGGCCATCTGAACCAGCTCTTTAAGCGCGTGTCATCGGTGAACAAATCTGCGGGTCCATTCGACGCGGTGTTGTGCGTGGGTCAGTTCTTCCCTGAGTCACCAGAACAGGTCGATGAGATGATGGCTTACATTGAAGGTGGGTCCCAGATTCCCCTCCCAACTTACTTCATCGGCGACTACGGCGTCGCTGCCCCTAAAATTTTATTGTCAGCTTCCAAAGACATCGCCAACCGTGGTTTCAAGATGGATGGCTTGAAGGTTTGCGATAATTTGTATTGGTTGAAAGGCAGTGGCAAGTTCTCTCTCTTCGGGTTATCCGTGGCCTATTTATCTGGTAGGAAATCACCAGGTATTCAACAGTTTGGAACATTCAGTCAGGATGATGTTGATGCTTTGCGAGCAATAGCTGAGGAACCTGAGATTGTTGATTTGTTCTTGACTAACGAATGGCCAAGTGGGGTCACAAATAGAGCAGCTACTTCAGACATTCCTGCTGGGCTCTCGGATTCTACAGGCAGCGATTCAACCATATCAGAGTTAGTAGAAGAGATTAAACCGCGCTATCACATTGCAGGCACTAAAGGTATATACTATGTGCGTGAACCATATTCCAACGTTGATGCTGTGCACATCACTCGTTTCATAGGACTTGCATCTGTTGGAAATAGAGATAAGCAGAAATTTATTCATGCAATTTCTCCCACACCTGCATCCACCATGTCTTCAGCTGAGATTGCCATGAAAACCACAAATACCACCTTATCGCCATACACATTTGTGGATAAAAAATCTTCTCCAAAGGATTCCACAAAGAGATCCAGCGAAAGTATATCTGATTCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAGAAACACAAATCTGGAGATGGTGATAAGATGTGTTTCAAATTTGTATCTTCTGGCTCTTGTCCAAGAGGAGAGGAGTGCAATTTTCGACACGACACAGATGCTAGAGAGCAGTGTATGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTATGCACAGCTTGCAGGATGAAGGTGATAGGCTTCCTTCCAGGATGCCTGGATCTGAAAATACTAGGTCTAGCAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCGCATTTAATCATAAGCATTGGGGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTCGTTGAAGACCATGTGCTGATAATACCAGTTGAGCATATGCCAAATACCTTATCGCTGTCTTCTGAATCTGAACTTGAGCTCTTTAGGTTTCAGAACAGTCTCAAAAGGTACTGCAAGAACCAAGGAAAGGAAGTCATCTTTTTTGAGTGGGTTTCCATACGTGGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAGTTATTGTTGAAAAAGTATTCAATTTAGCTGCCCAAAAGTTGGGATTTAAATTCGTGGCAAAGAAATTTGATAGTATTTCTGATGGAAGAAAGTTTTTGAAGACACAAATCGATGGGAACTCAAGCTTGTTCTATGCTGAAGTCCCAGGAGACACAATTCTGCTGCATCATGTTGAGGAGAAAGAAAGATTTCCTGCCCAATTTGGACGTGAGGTTCTGGCGGGGTTGCTTAATATGGCAGATAATGCAGATTGGAGGATTAACAAACATAGCAAAGATGAAGAAATGAAAATAGTTGAAGATTTCAAGAGCCGGTTTCAAGAATATGATCCAAACTGTTGA 1821 0.4294 MAPRILLCGDVLGHLNQLFKRVSSVNKSAGPFDAVLCVGQFFPESPEQVDEMMAYIEGGSQIPLPTYFIGDYGVAAPKILLSASKDIANRGFKMDGLKVCDNLYWLKGSGKFSLFGLSVAYLSGRKSPGIQQFGTFSQDDVDALRAIAEEPEIVDLFLTNEWPSGVTNRAATSDIPAGLSDSTGSDSTISELVEEIKPRYHIAGTKGIYYVREPYSNVDAVHITRFIGLASVGNRDKQKFIHAISPTPASTMSSAEIAMKTTNTTLSPYTFVDKKSSPKDSTKRSSESISDSQYWRYDVSQKRQKHKSGDGDKMCFKFVSSGSCPRGEECNFRHDTDAREQCMRGVCFDFLNKGKCERGPDCNFMHSLQDEGDRLPSRMPGSENTRSSRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPNTLSLSSESELELFRFQNSLKRYCKNQGKEVIFFEWVSIRGTHANLQAIPIPSSKAVIVEKVFNLAAQKLGFKFVAKKFDSISDGRKFLKTQIDGNSSLFYAEVPGDTILLHHVEEKERFPAQFGREVLAGLLNMADNADWRINKHSKDEEMKIVEDFKSRFQEYDPNC 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00146 606 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Gabi2179g00146 606 Pfam Protein similar to CwfJ C-terminus 2 514 603 IPR006767 -
Gabi2179g00146 606 Pfam Protein similar to CwfJ C-terminus 1 385 500 IPR006768 -
Gabi2179g00146 606 SUPERFAMILY CCCH zinc finger 345 370 IPR036855 GO:0046872
Gabi2179g00146 606 MobiDBLite consensus disorder prediction 269 288 - -
Gabi2179g00146 606 ProSiteProfiles Zinc finger C3H1-type profile. 346 369 IPR000571 GO:0046872
Gabi2179g00146 606 SMART c3hfinal6 343 368 IPR000571 GO:0046872
Gabi2179g00146 606 SMART c3hfinal6 311 336 IPR000571 GO:0046872
Gabi2179g00146 606 Gene3D - 298 372 - -
Gabi2179g00146 606 SUPERFAMILY CCCH zinc finger 313 338 IPR036855 GO:0046872
Gabi2179g00146 606 CDD MPP_CWF19_N 6 232 - -
Gabi2179g00146 606 Gene3D - 386 487 IPR036265 -
Gabi2179g00146 606 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 605 IPR040194 -
Gabi2179g00146 606 FunFam Zinc finger CCCH domain-containing protein 59 371 495 - -
Gabi2179g00146 606 SUPERFAMILY HIT-like 388 464 IPR036265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00146 Gabi-Chr2179 1600775 1606500 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2179g00146 CwfJ_C_1 5.8e-37 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00146 K24939 - gmx:100782106 1081.63