Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00141 ATGCAACCTTTTTGCCTTCTCTTTTCTCTCTATCTTCTCTTCTCTCCCTCTCAGCCCTCTTCCACCTTTATTACTGGACAAAAGGAAACCGTTTCAGTGCTTGCACTGATCCATTTCTCTCTCTATCTCTGGCTTGGTTTGTCTGTGTTTGTGTGTTTTTATGTGTATGCGTCCATGATACCAGCTTATCGCCATTCAGTATCTTCTCTTATGCCTCTGGATCTTAATGAAGATCAAAACCATCAGCTGTTCACTCCAAACCATCAAGTTTCTTCTTCATTTTCTTCTCTTTCATATCCTATTTTCTATAACCCGCCGGATCAAGATAAAAAAGGATCATACTACGAGGAACCAAAGCACCTACCAAGTGATGAAGAGGGTGAGAAGATTATTCCTTCTAGCGGATCATGGGATCATCACTCAGTGGCTGAGAAGCACGAGAGTAGCAGTGAACACAAGATGACAGTTTGGAAGAAAGAAGAAAGAGATGAAAATCTTCAAGCAGCCGAGGATGGCTCAGTGAAGTGGATGTCTTCAAAGATGAGAATGATGAGGAAGATGATGGTGTCGGATCAAACGGGTTCTGATATAGCAGGAAACTCTATGCACAAGTTTGAAGATCAAAAGCAACCATTGTCACCGCTTGGAACTGATAATAGCAGCAACAATTACTCAAACCACAGTAATAACACTGTTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGAGTGGGCCAAGAGGCCCCAAGTCACTTTGCAACGCATGTGGGATTCGACAAAGGAAGGCGAGACGTGCCTTGGCAGTGGCATCGGCAAATGGTGTTCACGTGGCAGCTGAGACATCTGTGAAAGGAAACAAGTTAAAGAAAAAAGAGAACAAGTCCAAAATTGTGTGTGCACCACAGATGAAAAAGAAGCGCAAGCTTAGAACCAAGCCATCTCAAAGTAGAAAAAAGTTAGGTTTCGAAGATTTTGCATTAAGCTTGAGTAACAACATGGCTCTCCAACAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCAATCCTGCTCATGGCTTTGTCTTATGGCCTAGTTCATGGATGA 1095 0.4347 MQPFCLLFSLYLLFSPSQPSSTFITGQKETVSVLALIHFSLYLWLGLSVFVCFYVYASMIPAYRHSVSSLMPLDLNEDQNHQLFTPNHQVSSSFSSLSYPIFYNPPDQDKKGSYYEEPKHLPSDEEGEKIIPSSGSWDHHSVAEKHESSSEHKMTVWKKEERDENLQAAEDGSVKWMSSKMRMMRKMMVSDQTGSDIAGNSMHKFEDQKQPLSPLGTDNSSNNYSNHSNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRALAVASANGVHVAAETSVKGNKLKKKENKSKIVCAPQMKKKRKLRTKPSQSRKKLGFEDFALSLSNNMALQQVFPQDEKEAAILLMALSYGLVHG 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00141 364 MobiDBLite consensus disorder prediction 108 164 - -
Gabi2179g00141 364 MobiDBLite consensus disorder prediction 206 225 - -
Gabi2179g00141 364 ProSitePatterns GATA-type zinc finger domain. 235 260 IPR000679 GO:0006355|GO:0043565
Gabi2179g00141 364 Gene3D - 233 271 IPR013088 GO:0006355|GO:0008270
Gabi2179g00141 364 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 59 364 - -
Gabi2179g00141 364 MobiDBLite consensus disorder prediction 110 164 - -
Gabi2179g00141 364 SMART GATA_3 229 280 IPR000679 GO:0006355|GO:0043565
Gabi2179g00141 364 ProSiteProfiles GATA-type zinc finger domain profile. 229 265 IPR000679 GO:0006355|GO:0043565
Gabi2179g00141 364 Pfam GATA zinc finger 235 268 IPR000679 GO:0006355|GO:0043565
Gabi2179g00141 364 CDD ZnF_GATA 234 266 IPR000679 GO:0006355|GO:0043565
Gabi2179g00141 364 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00141 Gabi-Chr2179 1526978 1528863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00141 153 364 C2C2-Gata Transcription Factor Family AT4G26150 38.934 2.91e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi2179g00141 GATA 4.9e-17 CL0167