Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00132 ATGGAACATGATGATGAATGCATAACGGGGCTATGTCTTGGACTGGGAATGGGAGGGCATGTGCCAAAAAAGGAGAAGCAGAAAGTGAATAAGCCTATGGCTCCCCTAGCGTTTGAGCTTTGTCCAAAAAGGGAAGCCATGAACGTGAATAATAACGAGGAAGACAGATTCAATTTGGAGAGAATCCATGAGGGACACCACTACCTCAATGCAAACAGCACTGATTCTGATAACACCAACAATATTAACGGTTGCAGAAAGAAACTGAGGCTTACAAAGGAACAATCAGCCATGCTTGAAAACAGCTTCAAGTTCCATAGCACTCTTAATCAAACCCAGAAACAAACACTTGCTAACCAATTGAATTTAAAGACTCGACAAATTGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTGTTGAAAAAACACTGTAAAAATCTAAGCGATGAGAACAGAGGGTTGAAGAAGGAATTGCAGGAACTACGTGCACTTAAAGTTGGAACATCGCCCTTATACATTCAACTTTCCAAAACGGCAACTATGACTATATGTTCTTCATGCGAGAAACTAAAGAAGCTCAATTAA 618 0.4078 MEHDDECITGLCLGLGMGGHVPKKEKQKVNKPMAPLAFELCPKREAMNVNNNEEDRFNLERIHEGHHYLNANSTDSDNTNNINGCRKKLRLTKEQSAMLENSFKFHSTLNQTQKQTLANQLNLKTRQIEVWFQNRRARTKLKQTEVDCELLKKHCKNLSDENRGLKKELQELRALKVGTSPLYIQLSKTATMTICSSCEKLKKLN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00132 205 CDD homeodomain 86 143 IPR001356 GO:0003677
Gabi2179g00132 205 SUPERFAMILY Homeodomain-like 85 151 IPR009057 -
Gabi2179g00132 205 SMART HOX_1 84 146 IPR001356 GO:0003677
Gabi2179g00132 205 Coils Coil 141 175 - -
Gabi2179g00132 205 Gene3D - 80 147 - -
Gabi2179g00132 205 Pfam Homeodomain 86 140 IPR001356 GO:0003677
Gabi2179g00132 205 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Gabi2179g00132 205 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Gabi2179g00132 205 SMART halz 142 185 IPR003106 GO:0006355|GO:0043565
Gabi2179g00132 205 Pfam Homeobox associated leucine zipper 142 175 IPR003106 GO:0006355|GO:0043565
Gabi2179g00132 205 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00132 Gabi-Chr2179 1447626 1448794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00132 73 201 Homeobox Transcription Factor Family AT4G37790 64.341 1.37e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi2179g00132 Homeodomain 9.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00132 - K09338 gmx:100812222 286.96