Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00125 ATGGGGAATTGTTGGAGTCATGCATCAGGTTCTCCAGGTGGTCCTCCCAACTCCAATACTGCCCCTGACCCCAACAATCAATCAGGGAGCATTCAGTTTTCTACTGTTCTCAGCAATACGAGATTAATACAGAATGGCAATTCTACTTCTCTTGGTCACTCTGGAGGAATCACTCGGTTCTTTGGGCCAAGTAGTAGTAATAATAACTCAACGGGAAATAATACTAGTAAATCCCTTTGGGGCTCTGAGAATAGCCAATCCTCTCGAGTAAGAGATGAAGAGGAATTTCCTTATGGGCAGATCTTGGATTCTGCAAACTTGAGAGTATTTACTTTGGCAGAACTGAGGGCAGCCACCAAAAATTTCGGAGCTGACACTGTGTTAGGAGAGGGGGGGTTTGGTAGAGTATACAAGGGTTGGATTAAGGGAAGAGCAGCATCTAATAGAGGTGAAGGATTGACTATTGCCATCAAGAAATTGAATTCTGAAAGCAGGCAAGGAGTTGCGGAATGGCAGTCAGAGGTGAGTTTCTTAGGAAGGCTTTCTCATCCCAACCTTGTAAAGTTATTGGGATTCGGGCGAGAGGAAAGTGAGCTATTCTTGGTGTATGAGTTTTTGCATCGGGGCAGCTTGGATAATCACCTATTTGGAAGAGGTGCAAGTGTTCGGCCACTTTCATGGGACACAAGGCTAAAGGTTATGATTGGAGCAGCTAGGGGACTAAATTTCCTTCATTCCTTGGAGAAGAAAATTATATATAGAGATTTTAAGCCCTCGAATATACTTCTTGACAAGGCATATACAGCCAAGTTATCAGACTTTGGGTTGGCCAAATCTGTTCCTTCTGCTGATCAGTCTCACGTATCAACCCAGGTTGTGGGAACACATGGCTATGCTGCTCCTGAGTACATCGCCACAGGTCATTTGTACGTTAAAAGTGATGTGTATGGATTTGGGATTGTTTTGGTGGAGATGCTGACTGGCAAGAGGATAGGTGAAATAATGCGCTTGTGTCAGCAAAAGTCCTTGCTGGATTGGCTCAAATCGAATCTATTAAATAGAGGGAAAATGAGAAGCACAATGGATGCAAGGTTGGAAGGCAAGTATCCACAAAACTTGGCTTTACAAGTAGCTCAACTTACTCTCAAATGCATCCAAGTAGACCCCAAAGTGAGGCCATCAATGAAAGAAGTTGTTGAAACATTGGAACAGATTGAAGCAGCCAATGAGAAACCAGCTGATAACAGAAAGAGGGCCTCTAATTCCCGGTTAATTCGACAACATGGCCCTCCAGATGGTGGTTAA 1305 0.4383 MGNCWSHASGSPGGPPNSNTAPDPNNQSGSIQFSTVLSNTRLIQNGNSTSLGHSGGITRFFGPSSSNNNSTGNNTSKSLWGSENSQSSRVRDEEEFPYGQILDSANLRVFTLAELRAATKNFGADTVLGEGGFGRVYKGWIKGRAASNRGEGLTIAIKKLNSESRQGVAEWQSEVSFLGRLSHPNLVKLLGFGREESELFLVYEFLHRGSLDNHLFGRGASVRPLSWDTRLKVMIGAARGLNFLHSLEKKIIYRDFKPSNILLDKAYTAKLSDFGLAKSVPSADQSHVSTQVVGTHGYAAPEYIATGHLYVKSDVYGFGIVLVEMLTGKRIGEIMRLCQQKSLLDWLKSNLLNRGKMRSTMDARLEGKYPQNLALQVAQLTLKCIQVDPKVRPSMKEVVETLEQIEAANEKPADNRKRASNSRLIRQHGPPDGG 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00125 434 ProSitePatterns Protein kinases ATP-binding region signature. 128 159 IPR017441 GO:0005524
Gabi2179g00125 434 SUPERFAMILY Protein kinase-like (PK-like) 98 402 IPR011009 -
Gabi2179g00125 434 Gene3D Transferase(Phosphotransferase) domain 1 206 428 - -
Gabi2179g00125 434 ProSiteProfiles Protein kinase domain profile. 122 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2179g00125 434 CDD STKc_IRAK 128 405 - -
Gabi2179g00125 434 MobiDBLite consensus disorder prediction 1 31 - -
Gabi2179g00125 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Gabi2179g00125 434 Pfam Protein kinase domain 126 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2179g00125 434 FunFam Serine/threonine-protein kinase BIK1 87 205 - -
Gabi2179g00125 434 Gene3D Phosphorylase Kinase; domain 1 106 205 - -
Gabi2179g00125 434 MobiDBLite consensus disorder prediction 44 86 - -
Gabi2179g00125 434 PANTHER OS01G0588500 PROTEIN-RELATED 78 406 - -
Gabi2179g00125 434 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 206 416 - -
Gabi2179g00125 434 MobiDBLite consensus disorder prediction 408 434 - -
Gabi2179g00125 434 MobiDBLite consensus disorder prediction 44 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00125 Gabi-Chr2179 1416856 1419652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00125 99 410 Receptor kinase-like Gene Family AT4G02010 42.857 1.22e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi2179g00125 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00125 - - gmx:100813304 717.998