Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00117 ATGAGTTTCTCCAAGGGTTCTTCTCCTTGCGACCAGATGCAGCAGCTTGATATAGAGGCTGGGTCTCACACTGATTTTGATGACCGAGACGACTCTTCTGATCCATTTGATATTACCAGCACAGAGAATGCTCCGATTCAACGCCTCAAGCGTTGGAGGCAAGCGGCACTTGTGCTTAATGCTTCTCGACGATTTCGTTACACCTTGGATTTGGAGAGAGAAGAAGAGAGGAAGCGAATATCGAGAATGGTTATAGTGCACTCACGGGCTATTCAAGCTGCATATCGTTTCAAGGAAGCTGGGAAGCAAGTGAACGGAACTCTAAAACCTTCTTCAAGCTCCTCTGGAGAATTTTCAATTGGACAAGAGCAACTTTCTTCAATTTCAAGGGAGCATGATACTACTGCTCTGCGGGAAAATGGAGGGGTTATAGGGTTATCACATTTATTGAAAACCAATTTAGAGAAGGGGATTCGAGATGATGATGCCGACTTGGTAAAACGGAGGAATGCATTTGGTTCCAACAACTACCCTCGAAAGAAAGGAAGTACTTTTTTGATGTTTATGTGGGATGCTTGCAAGGATTTGACCTTGATTATTTTAATGGTAGCTGCCATGGCTTCATTAGCACTTGGGATAAAATCTGAGGGTATTGCGGAAGGATGGTACGATGGGGGAAGCATTACCTTTGCAGTTATTCTAATTATTGTTGTTACAGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACTTAAATGAGCACAAGAGAAACATACATTTGGAGGTTATTAGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTTTGATCACCGGTCACTCTCTTGCAATTGATGAATCAAGTATGACCGGGGAGAGCAAGATTGTCAATAAGAATTCTAAGGATCCTTTTCTGATGTCTGGATGTAAAGTTGCAGATGGCAGTGGCACAATGCTTGTAACCGCTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGACAATGGGGAAGAAACCCCTTTGCAGGTACGCTTAAGTGGTCTCGCCAATTTCATTGGCATTGTTGGACTCTCTGTGGCTGTCGTTGTTCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATAGTAAAAATCCAGATGGAAGTGTTCAATTTACAGCAGGCAAGACCAAAGTTGGTGATGCTATTGACGGTGTAATTAAGATAGTCACTGTTGCGGTCACCATTGTAGTGATTGCAGTACCTGAAGGGCTCCCTTTAGCAGTTACTTTAACACTTGCTTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCTGCCACTACCATTTGCAGTGATAAGACTGGAACATTGACTATGAACCAGATGACTGTAGTTGAGGCTTGTATTGGAGGGAAGAAGATTGTTACTCCTTACAGAAAGTCACAGCTCTCTCCTATGCTCTGCTCATTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTATGTACCTGAGGGTGGTAACGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGAATTCAGCTTGGGATGAATTTTGAGGCTGCCAGATCAGAATCATCAATAATTCACGTCTTTCCATTCAATTCAGAAAAAAAACGAGGCGGAGTTGCAATACAGACGGCTAACTCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCCTGCTGTACAGGGTTTATGGATGCAAATGATCAGTTGGTGAAGATTAATGAAGAGGAGATGACAGTTTTTAAAAAGGTTATTGAAGATATGGCTGCTGAAAGTCTACGTTGTATTGCCATTGCATATAGATTGTGTGAAATGGAGAATGTTCCAACAAGTGAAGAAGAACTTGCTCACTGGTCATTACCAGAGGATAATCTCGTTTTACTGGCTATTGTTGGTATGAAGGATCCTTGTCGACCTGGTGTAAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGGGTTACGGTAAAAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTTTGGAATGTGGAATACTTGGTTCTTTTGCTGATGCTACAGAGCCAAACATCATTGAAGGAAAAAAATTTCGTGACCTGTCAGATGCAGGGAGAGAAGAAATTGCTGAAAGGATATTGGTTATGGGACGGTCGTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAAGAGGAAGGGGCATGTCGTGGCTGTAACTGGGGACGGAACAAATGATGCTCCAGCACTACATGAGGCAGACATAGGTCTTGCAATGGGCATTCAAGGTACAGAAGTTGCTAAAGAGAGCTCCGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGGCGGTCTGTATATGCAAATCTTCAGAAATTTATCCAGTTTCAGCTTACAATCAATATAGCAGCTATTGCTATAAATGTTATTGCTGCATTTTCCTCAGATGACATCCCACTAAATACAGTACAGCTTCTCTGGATAAATCTTATCATGGATACTCTTGCAGCACTAGCCTTGGCAACTGAACTACCAACTGATCACCTGATGGATCAGCGTCCAGTGGGACGAAGAGAACCTCTTGTAACAAATATTATTTGGAGGAATCTGCTGATTCAGGCAATGTACCAAGTGTGTGTCTTGCTTACACTCAATTATCGAGGCAGGAGCTTACTGGGTCTCAGGCTCGAGACCAATGACCTTGCAATCAAAGTGAAGAACTCTCTGATATTCAATGCATTTGTTTTTTGTCAAGTCTTTAATGAATTTAATGCACGAAAGCCAGATGAATTCAACATATTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATAGTGGGAATAACTGTTGTGCTTCAGATTGTCATCATTGAATTTCTTGGAAAATTCACTAAATCAGTAAAGCTTAATTGGAAGCAGTGGCTCATTTCCGTCATTATAGGATTTATAAGCTGGCCTCTTGCCGTGGTTGGAAAACTCGTACCAGTGCCAGCCACTCCCATCGGTAACTTTTTCGCTACTCCCATCAATAACTTTGTCCGAAGATTTCATGGTGGAAGAACTCAAAAGAAGGAATCTGAGGCATCTTGA 3267 0.4209 MSFSKGSSPCDQMQQLDIEAGSHTDFDDRDDSSDPFDITSTENAPIQRLKRWRQAALVLNASRRFRYTLDLEREEERKRISRMVIVHSRAIQAAYRFKEAGKQVNGTLKPSSSSSGEFSIGQEQLSSISREHDTTALRENGGVIGLSHLLKTNLEKGIRDDDADLVKRRNAFGSNNYPRKKGSTFLMFMWDACKDLTLIILMVAAMASLALGIKSEGIAEGWYDGGSITFAVILIIVVTAVSDYKQSLQFRDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVNKNSKDPFLMSGCKVADGSGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLSGLANFIGIVGLSVAVVVLIVLLARYFSGHSKNPDGSVQFTAGKTKVGDAIDGVIKIVTVAVTIVVIAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKKIVTPYRKSQLSPMLCSLLIEGVAQNTNGSVYVPEGGNGVEVSGSPTEKAILHWGIQLGMNFEAARSESSIIHVFPFNSEKKRGGVAIQTANSEIHIHWKGAAEIVLACCTGFMDANDQLVKINEEEMTVFKKVIEDMAAESLRCIAIAYRLCEMENVPTSEEELAHWSLPEDNLVLLAIVGMKDPCRPGVKDAVQLCQKAGVTVKMVTGDNVKTAKAIALECGILGSFADATEPNIIEGKKFRDLSDAGREEIAERILVMGRSSPNDKLLLVQALKRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANLQKFIQFQLTINIAAIAINVIAAFSSDDIPLNTVQLLWINLIMDTLAALALATELPTDHLMDQRPVGRREPLVTNIIWRNLLIQAMYQVCVLLTLNYRGRSLLGLRLETNDLAIKVKNSLIFNAFVFCQVFNEFNARKPDEFNIFKGVTRNYLFMGIVGITVVLQIVIIEFLGKFTKSVKLNWKQWLISVIIGFISWPLAVVGKLVPVPATPIGNFFATPINNFVRRFHGGRTQKKESEAS 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00117 1088 Gene3D - 493 691 IPR023299 GO:0000166
Gabi2179g00117 1088 FunFam Calcium-transporting ATPase 493 691 - -
Gabi2179g00117 1088 FunFam Calcium-transporting ATPase 808 1057 - -
Gabi2179g00117 1088 Gene3D - 164 359 - -
Gabi2179g00117 1088 SMART Cation_ATPase_N_a_2 140 213 IPR004014 -
Gabi2179g00117 1088 Gene3D - 480 836 IPR023214 -
Gabi2179g00117 1088 SUPERFAMILY Calcium ATPase, transduction domain A 261 356 IPR008250 -
Gabi2179g00117 1088 Pfam haloacid dehalogenase-like hydrolase 480 805 - -
Gabi2179g00117 1088 Pfam Cation transporting ATPase, C-terminus 876 1052 IPR006068 -
Gabi2179g00117 1088 NCBIfam HAD-IC family P-type ATPase 423 508 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00117 1088 NCBIfam HAD-IC family P-type ATPase 758 871 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00117 1088 MobiDBLite consensus disorder prediction 1 19 - -
Gabi2179g00117 1088 MobiDBLite consensus disorder prediction 21 36 - -
Gabi2179g00117 1088 SFLD p-type atpase 465 843 IPR044492 -
Gabi2179g00117 1088 Pfam E1-E2 ATPase 261 461 - -
Gabi2179g00117 1088 FunFam Calcium-transporting ATPase 684 836 - -
Gabi2179g00117 1088 SUPERFAMILY HAD-like 481 896 IPR036412 -
Gabi2179g00117 1088 SFLD C1.7: P-type atpase like 465 843 - -
Gabi2179g00117 1088 PRINTS P-type cation-transporting ATPase superfamily signature 791 810 - -
Gabi2179g00117 1088 PRINTS P-type cation-transporting ATPase superfamily signature 684 695 - -
Gabi2179g00117 1088 PRINTS P-type cation-transporting ATPase superfamily signature 815 827 - -
Gabi2179g00117 1088 PRINTS P-type cation-transporting ATPase superfamily signature 706 716 - -
Gabi2179g00117 1088 PRINTS P-type cation-transporting ATPase superfamily signature 307 321 - -
Gabi2179g00117 1088 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Gabi2179g00117 1088 MobiDBLite consensus disorder prediction 1 42 - -
Gabi2179g00117 1088 NCBIfam calcium-translocating P-type ATPase, PMCA-type 129 1055 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi2179g00117 1088 PRINTS Sodium/potassium-transporting ATPase signature 863 884 - -
Gabi2179g00117 1088 PRINTS Sodium/potassium-transporting ATPase signature 602 620 - -
Gabi2179g00117 1088 PRINTS Sodium/potassium-transporting ATPase signature 226 246 - -
Gabi2179g00117 1088 PRINTS Sodium/potassium-transporting ATPase signature 476 497 - -
Gabi2179g00117 1088 SUPERFAMILY Calcium ATPase, transmembrane domain M 145 1055 IPR023298 -
Gabi2179g00117 1088 Gene3D - 191 1044 - -
Gabi2179g00117 1088 FunFam Calcium-transporting ATPase 191 248 - -
Gabi2179g00117 1088 ProSitePatterns E1-E2 ATPases phosphorylation site. 485 491 IPR018303 -
Gabi2179g00117 1088 FunFam Calcium-transporting ATPase 239 359 - -
Gabi2179g00117 1088 FunFam Calcium-transporting ATPase 44 100 - -
Gabi2179g00117 1088 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 490 688 IPR023299 GO:0000166
Gabi2179g00117 1088 FunFam Calcium-transporting ATPase 9 plasma membrane-type 337 507 - -
Gabi2179g00117 1088 PANTHER CATION TRANSPORTING ATPASE 110 1055 - -
Gabi2179g00117 1088 Gene3D - 46 100 - -
Gabi2179g00117 1088 Pfam Cation transporter/ATPase, N-terminus 142 207 IPR004014 -
Gabi2179g00117 1088 Pfam Ca2+-ATPase N terminal autoinhibitory domain 33 76 IPR024750 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00117 Gabi-Chr2179 1298745 1326053 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00117 17 1062 Primary Pumps ATPases AT5G57110 70.599 0.0 1514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00117 K01537 - gmx:100790157 1712.97