Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00116 ATGAGTTTCTCCAAGGGTTCTTCTCCTTGCGACCAGATGCAGCAGCTTGATATAGAGGCTGGGTCTCCCACTGATTTTGATGACCGAGACTACTCTTCTGATCCATTTGATATTACCAGCACAAAGAATGCTCCGATTCAACGCCTCAAGCGTTGGAGGCAAGCGGCACTTGTGCTTAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTGAAGAGAGAAGAAGAGAGGAAGCGAATATTGAGAATGGTTATAGTGCATTCACGGGCTATTCAAGCAGCACATCGTTTCAAGGAAGCTGGGAAGCAAGTGAACGGAACTGTAAAACCTTCTTCAAGCTCCACTGGAGAATTTTCAATTGGACAAAAGCAACTTTCTTCAATTTCAAGGGAGCATGATACTACTGCTCTGCGGGAAATTGGAGGGGTTAAAGGGTTATCACATTCACTGAAAACCAATTTAGAGAAGGGAATTCGAGGTGATGATGCTGACTTGGTAAAACGGAGGAATGCATTTGGTTCCAACAATTACCCTCGAAAGAAAGGAAGAACTCTTTTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCTGCCATGGCTTCATTAGCACTTGGGATAAAATCTGAGGGTATTGCGGAAGGATGGTACGATGGGGGAAGCATTGCTTTTGCAGTTATTCTAGTTATTGTTGTTACAGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACTTAAATGAGCACAAGAGAAACATACATTTGGAGGTTATTAGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTTTGATCACCGGTCACTCTCTTGCAATTGATGAATCAAGTATGACCGGGGAGAGCAAGATTGTCGATAAGAATTCTAATGAACCTTTTCTGATGTCTGGATGTAAAGTTGCCGATGGCAGTGGCACAATGCTTGTAACCGCTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGACACTGGTGAAGAAACCCCTTTGCAGGTACGCTTAAATGGTCTCGCCACCTTCATTGGCATTGTTGGACTCTCTGTGGCTGTCATTGTTCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATATTAAAAACGCAGATGGAAGTGTTCAATTTACAGCAGGCAAGACCAAAGTTGGTGATGCTATTAACGGTGCAATTAAGATAGCCACTGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTCCCTTTAGCAGTTACCTTAACACTTGCTTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCGGCCACTACCATTTGCAGTGATAAGACTGGAACATTGACAATGAACGAGATGACTGTAGTTAAGGCTTGTATTGGTGGGAAGAAGATTGATCCTCCTCACGAAAAGTCACAGCTCTCTCCTATGCTCTGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTATGCACCTGAGGGTGGTGATGGTGTTGAGTTTTCTGGATCACCAACAGAAAAGGCAATTTTACGTTGGGGAATTCAGCTGGGGATGAGTTTTGAGGATGCCAGATCAGAATCATCAATAATTCACGTCTTTCCATTCAATTCAGACAAAAAACGAGGCGGAGTTGCAATACAGACGGCTGACTCTGAAATTCATTTACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCCTGCTGTACAGGGTATATGGATGCAAATGATCAGTTGGTGAAGATGAATGAAGAGGAGATGACATTTTTTAGAAAGGTTATTGAAGATATGGCTGCTGAAAGTCTACGTTGTATTGCCATTGCATATAGATTGTGTGAAATGGAGAATGTTCCAACTAGTGAAGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTTGTTTTACTGGCTATTGTTGGTATGAAGGATCCTTGTCGACCTGGTGTCAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGGGTTACGGTAAAAATGGTCACTGGTGACAATGTAAAAACTGCAAAAGCAATTGCTTTGGAATGTGGAATACTTTTTGCTGATGCTACAGAGCGAAACATCATTGAAGGAAAACAATTTCGTGACTTGTCAGATGCAGAGAGAGAAGAAATTGCTGAAAGGATATTGGTTATGGGACGGTCATCCCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTCGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCAGCACTACATGAGGCCGATATAGGTCTTGCAATGGGCATTCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTGAGATGGGGGCGGTCTGTATATGCAAATATTCAGAAGTTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCTCTTGTTATAAATGTTGTTGCTGCATTTTCCTCTGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCACTAGCCTTGGCAACTGAACCACCAACTGATCACCTGATGGATCAGCGTCCAATGGGCCGAAGAGAACCTCTTGTATCAAATATTATGTGGAGGAATCTGCTGATGCAGGCAATATACCAAGTGTCTGTCTTGCTTACACTCAATTTTCGAGGCAGGAGCTTACTGGGTCTTAGGCTTGAGACCAATGACCTTGCAATCAAAGTGAAGAACTCTCTGATATTCAATGCATTTGTTCTTTGTCAAGTCTTTAATGAATTTAATGCGCGAAAGCCAGATGAATTCAACATATTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATAGTGGGAATAACTGTTGTGCTTCAGGTTGTCATCATTGAATATCTTGGAAAATTCACTAAATCAGTAAAGCTTAATTGGAAACAGTGGCTCATTTCCGTCATTATAGGATTTATAAGCTGGCCTCTTGCCGTGGTTGGAAAACTCATACCAGTGCCAGCGAATCCTCCCATCAGTAACTTTATCGCGACTCCCATCAATAACTTTATCCGAAGATGTTGTGGCAGAAGATCTTAA 3240 0.425 MSFSKGSSPCDQMQQLDIEAGSPTDFDDRDYSSDPFDITSTKNAPIQRLKRWRQAALVLNASRRFRYTLDLKREEERKRILRMVIVHSRAIQAAHRFKEAGKQVNGTVKPSSSSTGEFSIGQKQLSSISREHDTTALREIGGVKGLSHSLKTNLEKGIRGDDADLVKRRNAFGSNNYPRKKGRTLLMFMWDACKDLTLIILMVAAMASLALGIKSEGIAEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFRDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVDKNSNEPFLMSGCKVADGSGTMLVTAVGINTEWGLLMASISEDTGEETPLQVRLNGLATFIGIVGLSVAVIVLIVLLARYFSGHIKNADGSVQFTAGKTKVGDAINGAIKIATVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNEMTVVKACIGGKKIDPPHEKSQLSPMLCSLLIEGVAQNTNGSVYAPEGGDGVEFSGSPTEKAILRWGIQLGMSFEDARSESSIIHVFPFNSDKKRGGVAIQTADSEIHLHWKGAAEIVLACCTGYMDANDQLVKMNEEEMTFFRKVIEDMAAESLRCIAIAYRLCEMENVPTSEEELAHWSLPEDDLVLLAIVGMKDPCRPGVKDAVQLCQKAGVTVKMVTGDNVKTAKAIALECGILFADATERNIIEGKQFRDLSDAEREEIAERILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNIAALVINVVAAFSSGDIPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDQRPMGRREPLVSNIMWRNLLMQAIYQVSVLLTLNFRGRSLLGLRLETNDLAIKVKNSLIFNAFVLCQVFNEFNARKPDEFNIFKGVTRNYLFMGIVGITVVLQVVIIEYLGKFTKSVKLNWKQWLISVIIGFISWPLAVVGKLIPVPANPPISNFIATPINNFIRRCCGRRS 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00116 1079 Gene3D - 493 691 IPR023299 GO:0000166
Gabi2179g00116 1079 PRINTS P-type cation-transporting ATPase superfamily signature 813 825 - -
Gabi2179g00116 1079 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Gabi2179g00116 1079 PRINTS P-type cation-transporting ATPase superfamily signature 706 716 - -
Gabi2179g00116 1079 PRINTS P-type cation-transporting ATPase superfamily signature 789 808 - -
Gabi2179g00116 1079 PRINTS P-type cation-transporting ATPase superfamily signature 307 321 - -
Gabi2179g00116 1079 PRINTS P-type cation-transporting ATPase superfamily signature 684 695 - -
Gabi2179g00116 1079 PANTHER CATION TRANSPORTING ATPASE 109 1053 - -
Gabi2179g00116 1079 MobiDBLite consensus disorder prediction 105 124 - -
Gabi2179g00116 1079 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 490 688 IPR023299 GO:0000166
Gabi2179g00116 1079 MobiDBLite consensus disorder prediction 1 39 - -
Gabi2179g00116 1079 Pfam Cation transporting ATPase, C-terminus 874 1051 IPR006068 -
Gabi2179g00116 1079 Pfam Ca2+-ATPase N terminal autoinhibitory domain 33 76 IPR024750 GO:0005516
Gabi2179g00116 1079 SMART Cation_ATPase_N_a_2 139 213 IPR004014 -
Gabi2179g00116 1079 MobiDBLite consensus disorder prediction 1 19 - -
Gabi2179g00116 1079 FunFam Calcium-transporting ATPase 239 359 - -
Gabi2179g00116 1079 SUPERFAMILY Calcium ATPase, transmembrane domain M 141 1053 IPR023298 -
Gabi2179g00116 1079 FunFam Calcium-transporting ATPase 806 1055 - -
Gabi2179g00116 1079 Pfam haloacid dehalogenase-like hydrolase 480 803 - -
Gabi2179g00116 1079 FunFam Calcium-transporting ATPase 9 plasma membrane-type 337 507 - -
Gabi2179g00116 1079 Gene3D - 164 359 - -
Gabi2179g00116 1079 NCBIfam HAD-IC family P-type ATPase 423 511 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00116 1079 NCBIfam HAD-IC family P-type ATPase 756 869 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00116 1079 NCBIfam HAD-IC family P-type ATPase 228 398 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00116 1079 Gene3D - 480 834 IPR023214 -
Gabi2179g00116 1079 Gene3D - 46 100 - -
Gabi2179g00116 1079 MobiDBLite consensus disorder prediction 102 124 - -
Gabi2179g00116 1079 FunFam Calcium-transporting ATPase 684 834 - -
Gabi2179g00116 1079 SFLD p-type atpase 465 841 IPR044492 -
Gabi2179g00116 1079 SUPERFAMILY HAD-like 481 894 IPR036412 -
Gabi2179g00116 1079 FunFam Calcium-transporting ATPase 191 248 - -
Gabi2179g00116 1079 Pfam E1-E2 ATPase 261 461 - -
Gabi2179g00116 1079 PRINTS H+-transporting ATPase (proton pump) signature 789 805 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00116 1079 PRINTS H+-transporting ATPase (proton pump) signature 821 846 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00116 1079 PRINTS H+-transporting ATPase (proton pump) signature 636 654 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00116 1079 FunFam Calcium-transporting ATPase 493 691 - -
Gabi2179g00116 1079 SFLD C1.7: P-type atpase like 465 841 - -
Gabi2179g00116 1079 CDD P-type_ATPase_Ca_PMCA-like 167 922 - -
Gabi2179g00116 1079 ProSitePatterns E1-E2 ATPases phosphorylation site. 485 491 IPR018303 -
Gabi2179g00116 1079 Gene3D - 191 1042 - -
Gabi2179g00116 1079 Pfam Cation transporter/ATPase, N-terminus 141 207 IPR004014 -
Gabi2179g00116 1079 NCBIfam calcium-translocating P-type ATPase, PMCA-type 118 1053 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi2179g00116 1079 FunFam Calcium-transporting ATPase 44 100 - -
Gabi2179g00116 1079 SUPERFAMILY Calcium ATPase, transduction domain A 261 356 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00116 Gabi-Chr2179 1247692 1281111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00116 17 1061 Primary Pumps ATPases AT5G57110 71.619 0.0 1525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00116 K01537 - gmx:100790157 1729.15