Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00106 ATGGAAAATATTGGTGAGGAGGAGTACAATAAGCATTACTGGGAGAACATGTTTTTCCAAACCCAAGAGTTTGACAGGCGGGCATTGGGTGATCATGCCTTATCCGGGTACTACGATTCGAGCTCCCCGGACGGTGCTGCTTCATCGGCGGCATCTAAGAACATTGTCTCCGAGAAGAACAGGAGGAATAAGCTCAACCAACGGCTTTTTGCACTTAGAGCGGTGGTCCCCAACATTACTAAGATGGATAAGGCTTCTATCATTAAGGATGCTATTGAGTACATCCAGCACTTGCATGAACAAGAGAAGGGAATCCAAGCTGAGATCATGGAACTTGAATCTGGGAAATTGAAAAACCCTAGCTATGACTTTGAGCATGATCATGACCTGCCTGTTATGCTGAGGTCCAAGAAGAAAAGAACAGATCAGCAGCTATTTGATTCTGTCAGTTCAAGAAATTCCCCAATTGAAATAATTGAGCTCACGGTTAAATACATGAAAGAGAAGACGATAGTGGTGAGCTTAACATGCAGTAAAAGGACAGAGACAATGGTAAAACTGTGTGAGGTGTTCGAATCCTTAAAGCGGAAGATCATCACAGCTCATATAACTTCTTTTTCAAGCACGCTTTTGAAGACGGTCTTCATTGAGGCAGATGAAGAAGAGAAAGATCTTTTGCAAATAAAAATCCAGAGTGCCATTTCAGCTCTTAATGATCGACAAAGCCCAATGAGCATCTGA 741 0.4265 MENIGEEEYNKHYWENMFFQTQEFDRRALGDHALSGYYDSSSPDGAASSAASKNIVSEKNRRNKLNQRLFALRAVVPNITKMDKASIIKDAIEYIQHLHEQEKGIQAEIMELESGKLKNPSYDFEHDHDLPVMLRSKKKRTDQQLFDSVSSRNSPIEIIELTVKYMKEKTIVVSLTCSKRTETMVKLCEVFESLKRKIITAHITSFSSTLLKTVFIEADEEEKDLLQIKIQSAISALNDRQSPMSI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00106 246 SMART finulus 55 104 IPR011598 GO:0046983
Gabi2179g00106 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983
Gabi2179g00106 246 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 116 - -
Gabi2179g00106 246 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 45 233 - -
Gabi2179g00106 246 Pfam Helix-loop-helix DNA-binding domain 56 99 IPR011598 GO:0046983
Gabi2179g00106 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 113 IPR036638 GO:0046983
Gabi2179g00106 246 Gene3D - 46 115 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00106 Gabi-Chr2179 1093794 1098447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00106 1 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 59.817 4.33e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2179g00106 HLH 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00106 - - gmx:100817978 348.591