Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00101 ATGTCTTCTTGTTTAAGTGGAGCTGGTGGAAGAACTTACGGGTTCGATTTCGAATTTGTTAAATCACCATCTTCTTCAACTCGAACTTCACATACATCATCTTCTCCATCCTCAACAATCTCTGAATCCAGCAACTCCCCATTAGCAATCTCCACAAGAAAACCCAGAACCCCTCGAAAGCGACCCAACCAAACCTACAATGAAGCTGCGGCACTCCTTTCCACTGCATACCCAAACCTGTTCTCCACCAAGAACCTCAAAACAACGGGAAAATTCACCAAACAAGTAACGGATTTGTACGATTCCTCAGAACTGCTGTTGCCTTTCAGGGTGTTTGACACCTCATGCTCCTCTTTCCTTCTCCATCAACACAAACCCAGTTTCCCATTGGAGCCCAAAGTATTGAACCTGCAAGAGAAGCCATGCCAAAGCCCGGGGGAGATAAGCTCGAGGTTGGTGAATTCACTTGATTTGGACGATGATTGCCAAGAAGATTTCGATGCGGAATCGATTCTCGACGAGGAAATCGAGGAGGGGATTGATAGTATCATGGGGAGATTGGATTCCAATGGCGCCTCTTCTCATGATGACCATCCATGGATGGGTTTTGGCGGGAAATTCGGGTTGCAGAGAACGGCGGTTAGAGCTTTCCGTCACGTCGATGACGGCAACTGGTGGAATTTCCCGGCCGTTGATATCCTTCAAATCTCACCCAAAATCAGCAACAATCCTCCTCCTCCTCCTCCTCCGCCGCCTGCGGCGGAGAAGAAGAAGACGAAGAAGAAGAAGGTGGAGAAACCAAACGTGGTGGAGTTGAAGAACGCGGAATTGCCGAAATCGAACCCGGGTTTGCTGTTGAAATTGAATTACGACGAGGTTCGGAATGCTTGGTCTGACCGGGGGTCACCGTTCGCCGACGACAGCCCCGCCTCCGACGCACCGGGAAATGACGTCACTGCGCGGCTGTCGCAAATCGATTTGTTGTGGGATAACGGAGGGATGAGAGAAGCTAGCATGCTGCGCTACAAAGAAAAGCGGCGTACACGCCTCTTCTCCAAGAAGATCAGGTACCAGGTCAGGAAAGTCAACGCTGATCGACGGCCCAGAATGAAGGGACGATTTATTAGGAGACTGAATCCTAGCTCGAATGCACACAGATGA 1161 0.4987 MSSCLSGAGGRTYGFDFEFVKSPSSSTRTSHTSSSPSSTISESSNSPLAISTRKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTTGKFTKQVTDLYDSSELLLPFRVFDTSCSSFLLHQHKPSFPLEPKVLNLQEKPCQSPGEISSRLVNSLDLDDDCQEDFDAESILDEEIEEGIDSIMGRLDSNGASSHDDHPWMGFGGKFGLQRTAVRAFRHVDDGNWWNFPAVDILQISPKISNNPPPPPPPPPAAEKKKTKKKKVEKPNVVELKNAELPKSNPGLLLKLNYDEVRNAWSDRGSPFADDSPASDAPGNDVTARLSQIDLLWDNGGMREASMLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFIRRLNPSSNAHR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00101 386 MobiDBLite consensus disorder prediction 237 267 - -
Gabi2179g00101 386 ProSiteProfiles CCT domain profile. 335 377 IPR010402 GO:0005515
Gabi2179g00101 386 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 379 - -
Gabi2179g00101 386 MobiDBLite consensus disorder prediction 22 52 - -
Gabi2179g00101 386 MobiDBLite consensus disorder prediction 22 63 - -
Gabi2179g00101 386 Pfam CCT motif 335 376 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00101 Gabi-Chr2179 1058419 1062351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00101 262 377 C2C2-CO-like Transcription Factor Family AT1G25440 41.353 1.83e-19 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2179g00101 CCT 2.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00101 - - aprc:113845796 485.723