Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00099 ATGCGGGATAGCAAGAAGAAGTTAGGAAATGGAGAATCTAAAAAATCCGGTTACTCGAAGGCACGCACAAAGTTCCAAGGGAAGAAGCATAAATCGGAATCAAAATCTCACACACACAGTGTTGGCACTAACATATCAAGGAAAAGAGCTACTGACTGTACCCTCAAGGGGCCACGCAAGGATTCTTCTAATAAGAAATCTAGAACTGGACAAAATTTTCAACAAACTGACAGAAAATCCTCACAGAAGCCATTGTCAAAGCTACAAGGCAAAAAAGTTTCTCTTAGTTCTAGGAAAGAAGGGAAAGTTGTTGATGGGGAGGTAAAGCTTCAAAAGAGAAAGAGAAAGAAGAAAAGACAAAGGAATAACGTGGATCTTGATGATGCTTCACGCCTGCAGAGGAGAACAAGGTACCTTTTAATCAAAATGAAGCTAGAGCAGAACCTAATTGATGCTTACTCTGGAGAGGGTTGGAAAGGTCAGAGTCGCGAAAAGATTAGGCCAGAGAAGGAGCTACAAAGAGCGCGAAAGCAGATTTTAAAATATAAACTGAGTATTCGGGATGCTATTCGCCAGTTGGATTCTCTTAGTTCGCTGAGTAGCATTCCTGTGATTGCTCCAGATGGGTCTGTTAACCATGAACATGTATTCTGTGCAAAGTGCAAGTTGCGTGAATCTCTTCCAGATAATGATATAATACTCTGTCATGGTACATGCAACTGTGCTTTTCATCAAGAATGTCTTGATCCTCCTTTAGACACTGAAAATATTCCTCATGGAGACCACGGCTGGTTTTGTAAATTTTGTGAGTGTAAGATGGAAATACTGGAGGCAATGAATGCCCATCTTGGAACTCACTTTTCCTTGCACAGTACTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATACCTGATGGTGATACTGGATTACTGAATCCTGAAGAAGAATGGCCATCAGATGATTCTGAAGATGATGATTATAATCCAGAGAGGGGAGAAGACAGCCACAATATCAACACAAAAGGAACTGATGATAATGCATCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTCTTCCGATGGTGAATGTTCTCCAGTATATGAAGGTGTCAACCATGAATATTGTTCTGTCAATAGCAGCATAGATTCTGATGAATCTGAGGAAAAAGCATGTGGCCGCAGGCAGCGAAAAGCCGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTGCATATGAACAGATGAGTGAAGATGAGGACTGGGGTCCTGGCAAAAGTAAGCGAAGAGAAAAGGAGTCTGATGCTGTGAATACTCTTATGACTTTGCATGAAAGTAAAAATAAATATCCCAATAAGGAGCACAGCGACAGGACAAGAAAGGATTCTTCGGGCATAAATATCAAAAGGTCTTGTCATAGGATTCCACGTGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGAGAATGAACTTCCTCCAAGATCTATGAAGGAGGATCTTTCAAAAGAGTTGGGACTTGATATTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACATAGCACTTAAAACCAGAAAGTTGCATGCAGAAGGAGAAGACCAGCTTCAGAGTATTATCACTTCTAGGAAGAACTCTACATTACAAAATCCGGAGAAAGCTAATATTTTGAAATCAAATACCTCAAAAATTACTACGACCCATTCCCAGAAGAATGTTAGAAATGTCACTGGTAGAAAGAAAAGAAAGTCACCTAGCAGTCCTTTCAAGGAAAGACAACCAGAAATACCTCCACCTCATCCAATAGAAAATGGAAACAAGGACTTTATGGAGATGAGTGATGATGTGAGCTTGAAGAAGTTGTTGAAAGAAAGAAAGAGGAGGGTAAATTTTACATTTGAAGGAAACTCTCAAGCGGCAGAGTTGGAATTTGAAAGACTTAGCAAATTGAAGATTAAACTAGATAGCATGAAACAGAAATTAACTGGAATTCAAAATTACAGAGTAAAGGGTTTAGATATACCCCATTCGAATGAACCATCTATTATTTATGTACCCACAGCTGTATTAAAGGAAAAGGTTTGA 2100 0.3967 MRDSKKKLGNGESKKSGYSKARTKFQGKKHKSESKSHTHSVGTNISRKRATDCTLKGPRKDSSNKKSRTGQNFQQTDRKSSQKPLSKLQGKKVSLSSRKEGKVVDGEVKLQKRKRKKKRQRNNVDLDDASRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKYKLSIRDAIRQLDSLSSLSSIPVIAPDGSVNHEHVFCAKCKLRESLPDNDIILCHGTCNCAFHQECLDPPLDTENIPHGDHGWFCKFCECKMEILEAMNAHLGTHFSLHSTWQDVFKEEAAIPDGDTGLLNPEEEWPSDDSEDDDYNPERGEDSHNINTKGTDDNASDDLSSSTSLCSSDGECSPVYEGVNHEYCSVNSSIDSDESEEKACGRRQRKAVDYKKLYDEMFGKDAPAYEQMSEDEDWGPGKSKRREKESDAVNTLMTLHESKNKYPNKEHSDRTRKDSSGINIKRSCHRIPRDAVEKLRQVFAENELPPRSMKEDLSKELGLDIEKVSKWFKNARYIALKTRKLHAEGEDQLQSIITSRKNSTLQNPEKANILKSNTSKITTTHSQKNVRNVTGRKKRKSPSSPFKERQPEIPPPHPIENGNKDFMEMSDDVSLKKLLKERKRRVNFTFEGNSQAAELEFERLSKLKIKLDSMKQKLTGIQNYRVKGLDIPHSNEPSIIYVPTAVLKEKV 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00099 699 SMART PHD_3 217 270 IPR001965 -
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 67 92 - -
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 341 356 - -
Gabi2179g00099 699 Gene3D - 472 537 - -
Gabi2179g00099 699 CDD PHD_PRHA_like 217 269 IPR045876 -
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 1 128 - -
Gabi2179g00099 699 SMART HOX_1 472 534 IPR001356 GO:0003677
Gabi2179g00099 699 ProSiteProfiles 'Homeobox' domain profile. 470 530 IPR001356 GO:0003677
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 1 19 - -
Gabi2179g00099 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 281 IPR013083 -
Gabi2179g00099 699 ProSitePatterns Zinc finger PHD-type signature. 218 269 IPR019786 -
Gabi2179g00099 699 FunFam pathogenesis-related homeodomain protein-like 209 269 - -
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 415 442 - -
Gabi2179g00099 699 SUPERFAMILY FYVE/PHD zinc finger 210 275 IPR011011 -
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 415 478 - -
Gabi2179g00099 699 Pfam Homeodomain 478 524 IPR001356 GO:0003677
Gabi2179g00099 699 CDD homeodomain 477 525 IPR001356 GO:0003677
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 21 35 - -
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 547 578 - -
Gabi2179g00099 699 Pfam PHD-finger 217 272 IPR019787 -
Gabi2179g00099 699 ProSiteProfiles Zinc finger PHD-type profile. 215 272 IPR019787 -
Gabi2179g00099 699 FunFam pathogenesis-related homeodomain protein 472 536 - -
Gabi2179g00099 699 Coils Coil 172 192 - -
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 547 613 - -
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 314 328 - -
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 304 356 - -
Gabi2179g00099 699 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 25 698 - -
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 52 66 - -
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 93 110 - -
Gabi2179g00099 699 MobiDBLite consensus disorder prediction 451 478 - -
Gabi2179g00099 699 SUPERFAMILY Homeodomain-like 467 529 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00099 Gabi-Chr2179 1043043 1049190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00099 122 535 Homeobox Transcription Factor Family AT4G29940 56.368 1.26e-148 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gabi2179g00099 PHD 1.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00099 - - gmx:100817639 994.956