Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00086 ATGTCTTCACAGGAGAAGAGCAAAGCAGGGAAAAAGTTGCAGAAGAGCTACTTCGATGTGTTGGGTTTGTGTTGCTCTTCTGAGGTGCCCTTGATCGAGAACATCCTGAAACCTCTAGAAGGAATCAAAGAGGTTTCAGTCATCGTCCCATCAAGGACTGTCATTGTTGTTCATGATAGTCTTGTCATTTCGCAACTTCAAATTGTTAAGGCTCTCAATCAAGCAAGACTAGAAGCGAATATCAGGGTGCTCGGTGACGCAAAGCACCAAAAAAGATGGCCAAGCCCATACTCAGTTGCTTCTGGTGTGTTACTTTTGCTTTCGTTTCTGACGTTTGCGTACCATCCTTTGAAATATGTGGCTCTCGGAGCAGTCGCTGCCGGCGTCTTTCCGATTATCTTAAAAGTTATCGTCTCCATTCGGAACCTTAGACTTGACATAAACATTCTCATGATCGTAGCAGTTATTGGGACAATTGTTATGAATGATTATTTGGAAGCGGGCACCATTGTTTTCCTCTTCTCAATTGCAGAATGGCTAGAGTCAAGGGCGAGCCACAAGGCAAATGCAGTAATGTCATCGTTGATGAACATATCCCCTCAAAAAGCAGTGATGGCTGAAACAGGAGAGGTTGTGGATGTTGATGAGGTGAAAGTAAACACCATCCTAGCAGTTAAAGCAGGGGAGGTGATACCCATTGATGGAATTGTTTTAGATGGAAACTGTGAAGTTGACGAGAAAACATTGACTGGGGAATCATTCCCAGTAGCCAAACTAAAAGATTCTACTGTATGGGCTGGCACCATCAATTTAAATGGTTATATTAGTGTGAAAACTACTGCACTATCTGAAGATTGTGTGGTGGCTAAAATGGCAAAGCTTGTGGAAGAAGCTCAAAATAGCAAAACCAGCACTCAAAGATTGATTGACAAGTTTGCCAAGTTTTATACCCCAGCTGTTGTAGTCATATCAGCTCTTGTGGCGGGGATTCCAATTCTGTTAAAAGTACATAACGAGGAACAATGGCTTCACTTTGCACTGGTTGTTTTAGTAAGTGCATGTCCATGTGCACTTATCCTTTCAACGCCAATTGCAACTTTTTGTGCTTATACTACAGCAGCTACATCAGGTCTTCTCATCAAAGGGGGTGATAATCTTGAAACACTTGCAAAAATTAAGGTCATGGCTTTTGACAAAACGGGTACTATAACAAAGGGTGAATTTGTGGTGACAAATTTTCAATCTCTTTCAGATGACATTGACTTGAACACATTGCTTTACTGGGTGTCAAGTGTTGAGAGCAAGGCAAGCCATCCATTGGCAGCAACAATTGTTGATTATGGGAGGTCTCTCTCCATTGAACCAAAGCCAGAAAAGGTGACGGAATTTGAAAATTTTCCCGGAGAAGGAATATGTGGAAAAATTGACGGGAGAGTTCTTTACATTGGAAATAAAAAAATTGCTACAAGAGCTGGGTCTGAAACAGTTCCGACCTTTCAAGGTGAAAGTCAAAGAGGAAAGACCATTGGTTACATATACTCCGGAGCAACACCAGTTGGACTTTTCTCTCTATCAGATGCTTGTCGATCAGGGGTTCAGGAGGCAATAGAACAGCTGAAGTTATTGGGAATCAAAACCGCTATGCTAACTGGGGATAGTCAATCAGCTGCAATGCAAGCACAGGAGCAGCTAGGGCATGCTCTCGAGTTAGTCCATGCAGAACTTTTGCCAGAGGACAAAGTAAAAATCATCTCGGAATTTAAAAAGGAAGGTCCAACAGCCATGATTGGAGATGGTGTAAATGACGCGCCTGCATTAGCTACAGCTGATATCGGAATATCAATGGGGATTTCAGGTTCTGCACTGGCAAGTGAGACAGGCAATGTAATTCTTATGTCAAATGACATTAGGAAAATACCTGAAGCCATCAAGCTTGCAAGAAAATCTAGGAGGAAAGTCATAGAAAATATTATTTTTTCAGTCATTACTAAGGCTTCGATTCTTGGTTTGGCCATTGCTGGTCATCCACTTGTTTGGGCAGCTGTTCTTGCTGATGTTGGAACATGTCTAGTGGTCATCTTAAACAGCATGTTACTTCTTCAAAGAGGACACAAGCATGGTGGAAAATGTTGTAGATCTTCCACTAAACTACATATCCACAAGAAGGGATGTGATGGAACTAATGATAGTTCCTCTCATCATCATCATCATCATCAACATCATAGCCATAAGCATTGTTGCTCAGACAAGTCACAAAAGATGTCTCAGCCTCAGAAGTGTGCCTCCCAGACATGTTCCTCAAAGTTCCCGCCCTGTCCTTCTAATTCAAGTTTAGGTGGAAGTGTTAACCATCGTAATATCATGGAGAGTCATGATCAATGTAAGGGAAGTGAATTTCATGAAGCAGATCACTGTCATCATGGAAGATGTGACAAGAGTCAAGACGGATCCCAGAAGCATGATGCTGAAAATGAGGGTTGTTTAGATTCACACTATTTGATTCTAAATGCAGAACATAATGGTGCAGTTGCAATCAACAGAAAAGATAATTGTTTGGGGCACAAGGACCATGGGACAAAACACTGCCACAACCAAAATATTGACATGGTTTCTCATGATAGTGCTTCACTTACTTCTCCTTGCCATCTCAATATTTCTTGTCAAAAAGAAAGCCAACAATTTACTAATAAGCATTGCCACTTGATCCATGGTTGTGAAAAGCTGAAAGATCATGAATCCAAAAAAACGTTAGGATCCAATCATGACACTCAGCATAAAAAATCTGGTTGTCATTCTGATTCTAAGAAGTGTGAGACAGGTGAAATATCCATTGACATCGTCAATGAGCATGTTGAATCAGCCTTAATGCATGGTTGTCTAAGTTCTGAAGAGAAAGAAAATGGTTCCTGTTGTAAAGGCTGCTCAGACACATGCGAGAAATTGCCTGTTTTGTGTGCCTGTGAGAGTTCAAATGAGAAAGAAGTCAGTGCATGTTGCGGAAATGAGTGCTCTTCAAAAGATTCTAAGGAATCCCCTATAGTAAATGCTTGTATTAGTTTGGACAAGAGAGAAGTTGGTGGATGTTGCAAGAGCTACATGAAGGAATGTTGTGCCAAGCATGGGCACTCAGGGGCTGGTTTAGTGGGAGGTTTATCAGAAATTATTACAGAATAG 3174 0.4137 MSSQEKSKAGKKLQKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVVHDSLVISQLQIVKALNQARLEANIRVLGDAKHQKRWPSPYSVASGVLLLLSFLTFAYHPLKYVALGAVAAGVFPIILKVIVSIRNLRLDINILMIVAVIGTIVMNDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMNISPQKAVMAETGEVVDVDEVKVNTILAVKAGEVIPIDGIVLDGNCEVDEKTLTGESFPVAKLKDSTVWAGTINLNGYISVKTTALSEDCVVAKMAKLVEEAQNSKTSTQRLIDKFAKFYTPAVVVISALVAGIPILLKVHNEEQWLHFALVVLVSACPCALILSTPIATFCAYTTAATSGLLIKGGDNLETLAKIKVMAFDKTGTITKGEFVVTNFQSLSDDIDLNTLLYWVSSVESKASHPLAATIVDYGRSLSIEPKPEKVTEFENFPGEGICGKIDGRVLYIGNKKIATRAGSETVPTFQGESQRGKTIGYIYSGATPVGLFSLSDACRSGVQEAIEQLKLLGIKTAMLTGDSQSAAMQAQEQLGHALELVHAELLPEDKVKIISEFKKEGPTAMIGDGVNDAPALATADIGISMGISGSALASETGNVILMSNDIRKIPEAIKLARKSRRKVIENIIFSVITKASILGLAIAGHPLVWAAVLADVGTCLVVILNSMLLLQRGHKHGGKCCRSSTKLHIHKKGCDGTNDSSSHHHHHHQHHSHKHCCSDKSQKMSQPQKCASQTCSSKFPPCPSNSSLGGSVNHRNIMESHDQCKGSEFHEADHCHHGRCDKSQDGSQKHDAENEGCLDSHYLILNAEHNGAVAINRKDNCLGHKDHGTKHCHNQNIDMVSHDSASLTSPCHLNISCQKESQQFTNKHCHLIHGCEKLKDHESKKTLGSNHDTQHKKSGCHSDSKKCETGEISIDIVNEHVESALMHGCLSSEEKENGSCCKGCSDTCEKLPVLCACESSNEKEVSACCGNECSSKDSKESPIVNACISLDKREVGGCCKSYMKECCAKHGHSGAGLVGGLSEIITE 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00086 1057 SUPERFAMILY HAD-like 395 697 IPR036412 -
Gabi2179g00086 1057 MobiDBLite consensus disorder prediction 733 747 - -
Gabi2179g00086 1057 Gene3D - 185 299 - -
Gabi2179g00086 1057 PRINTS H+-transporting ATPase (proton pump) signature 596 612 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00086 1057 PRINTS H+-transporting ATPase (proton pump) signature 628 653 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00086 1057 MobiDBLite consensus disorder prediction 723 750 - -
Gabi2179g00086 1057 NCBIfam heavy metal translocating P-type ATPase 147 699 IPR027256 GO:0006812|GO:0016020|GO:0019829
Gabi2179g00086 1057 FunFam Putative cadmium/zinc-transporting ATPase 3 10 83 - -
Gabi2179g00086 1057 NCBIfam cadmium family heavy metal-translocating P-type ATPase 147 487 - -
Gabi2179g00086 1057 Pfam haloacid dehalogenase-like hydrolase 392 610 - -
Gabi2179g00086 1057 SFLD p-type atpase 379 648 IPR044492 -
Gabi2179g00086 1057 ProSitePatterns E1-E2 ATPases phosphorylation site. 398 404 IPR018303 -
Gabi2179g00086 1057 SFLD C1.7: P-type atpase like 379 648 - -
Gabi2179g00086 1057 Pfam E1-E2 ATPase 206 374 - -
Gabi2179g00086 1057 SUPERFAMILY HMA, heavy metal-associated domain 11 80 IPR036163 GO:0046872
Gabi2179g00086 1057 SUPERFAMILY Calcium ATPase, transduction domain A 210 295 IPR008250 -
Gabi2179g00086 1057 NCBIfam HAD-IC family P-type ATPase 170 672 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00086 1057 Gene3D - 387 647 IPR023214 -
Gabi2179g00086 1057 CDD P-type_ATPase_HM 99 698 - -
Gabi2179g00086 1057 Gene3D - 407 528 IPR023299 GO:0000166
Gabi2179g00086 1057 ProSitePatterns Hypothetical cof family signature 2. 596 618 - -
Gabi2179g00086 1057 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 8 701 - -
Gabi2179g00086 1057 Gene3D - 10 83 - -
Gabi2179g00086 1057 FunFam Copper-transporting ATPase 1, putative 185 299 - -
Gabi2179g00086 1057 PRINTS P-type cation-transporting ATPase superfamily signature 396 410 - -
Gabi2179g00086 1057 PRINTS P-type cation-transporting ATPase superfamily signature 596 615 - -
Gabi2179g00086 1057 PRINTS P-type cation-transporting ATPase superfamily signature 520 531 - -
Gabi2179g00086 1057 PRINTS P-type cation-transporting ATPase superfamily signature 620 632 - -
Gabi2179g00086 1057 PRINTS P-type cation-transporting ATPase superfamily signature 245 259 - -
Gabi2179g00086 1057 PRINTS P-type cation-transporting ATPase superfamily signature 542 552 - -
Gabi2179g00086 1057 SUPERFAMILY Calcium ATPase, transmembrane domain M 147 487 IPR023298 -
Gabi2179g00086 1057 ProSiteProfiles Heavy-metal-associated domain profile. 14 80 IPR006121 GO:0046872
Gabi2179g00086 1057 FunFam Putative cadmium/zinc-transporting ATPase 3 407 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00086 Gabi-Chr2179 888652 896900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00086 9 762 Primary Pumps ATPases AT4G30110 66.711 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00086 K01534 - gmx:100817567 1540.01