Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00085 ATGTCTTCACAGGAGAAGAGCAAAGCAGGGAAAAAGTTGCAGAAGAGCTACTTCGATGTGTTGGGTTTGTGTTGCTCTTCTGAGGTGCCCTTGATCGAGAACATCCTGAAACCTCTAGAAGGAATCAAAGAGGTTTCAGTCATCGTCCCATCAAGGACTGTCATTGTTGTTCATGATAGTCTTGTCATTTCGCAACTTCAAATTGTTAAGGCTCTCAATCAAGCAAGACTAGAAGCGAATATCAGGGTGCTCGGTGACGCAAAGCACCAAAAAAGATGGCCAAGCCCATACTCAGTTGCTTCTGGTGTGTTACTTTTGCTTTCGTTTCTGACGTTTGCGTACCATCCTTTGAAATATGTGGCTCTCGGAGCAGTCGCTGCCGGCGTCTTTCCGATTATCTTAAAAGTTATCGTCTCCATTCGGAACCTTAGACTTGACATAAACATTCTCATGATCGTAGCAGTTATTGGGACAATTGTTATGAATGATTATTTGGAAGCGGGCACCATTGTTTTCCTCTTCTCAATTGCAGAATGGCTAGAGTCAAGGGCGAGCCACAAGGCAAATGCAGTAATGTCATCGTTGATGAACATATCCCCTCAAAAAGCAGTGATGGCTGAAACAGGAGAGGTTGTGGATGTTGATGAGGTGAAAGTAAACACCATCCTAGCAGTTAAAGCAGGGGAGGTGATACCCATTGATGGAATTGTTTTAGATGGAAACTGTGAAGTTGACGAGAAAACATTGACTGGGGAATCATTCCCAGTAGCCAAACTAAAAGATTCTACTGTATGGGCTGGCACCATCAATTTAAATGGTTATATTAGTGTGAAAACTACTGCACTATCTGAAGATTGTGTGGTGGCTAAAATGGCAAAGCTTGTGGAAGAAGCTCAAAATAGCAAAACCAGCACTCAAAGATTGATTGACAAGTTTGCCAAGTTTTATACCCCAGCTGTTGTAGTCATATCAGCTCTTGTGGCGGGGATTCCAATTCTGTTAAAAGTACATAACGAGGAACAATGGCTTCACTTTGCACTGGTTGTTTTAGTAAGTGCATGTCCATGTGCACTTATCCTTTCAACGCCAATTGCAACTTTTTGTGCTTATACTACAGCAGCTACATCAGGTCTTCTCATCAAAGGGGGTGATAATCTTGAAACACTTGCAAAAATTAAGGTCATGGCTTTTGACAAAACGGGTACTATAACAAAGGGTGAATTTGTGGTGACAAATTTTCAATCTCTTTCAGATGACATTGACTTGAACACATTGCTTTACTGGGTGTCAAGTGTTGAGAGCAAGGCAAGCCATCCATTGGCAGCAACAATTGTTGATTATGGGAGGTCTCTCTCCATTGAACCAAAGCCAGAAAAGGTGACGGAATTTGAAAATTTTCCCGGAGAAGGAATATGTGGAAAAATTGACGGGAGAGTTCTTTACATTGGAAATAAAAAAATTGCTACAAGAGCTGGGTCTGAAACAGGTGAATTTCCGACCTTTCAAGGTGAAAGTCAAAGAGGAAAGACCATTGGTTACATATACTCCGGAGCAACACCAGTTGGACTTTTCTCTCTATCAGATGCTTGTCGATCAGGGGTTCAGGAGGCAATAGAACAGCTGAAGTTATTGGGAATCAAAACCGCTATGCTAACTGGGGATAGTCAATCAGCTGCAATGCAAGCACAGGAGCAGCTAGGGCATGCTCTCGAGTTAGTCCATGCAGAACTTTTGCCAGAGGACAAAGTAAAAATCATCTCGGAATTTAAAAAGGAAGGTCCAACAGCCATGATTGGAGATGGTGTAAATGACGCGCCTGCATTAGCTACAGCTGATATCGGAATATCAATGGGGATTTCAGGTTCTGCACTGGCAAGTGAGACAGGCAATGTAATTCTTATGTCAAATGACATTAGGAAAATACCTGAAGCCATCAAGCTTGCAAGAAAATCTAGGAGGAAAGTCATAGAAAATATTATTTTTTCAGTCATTACTAAGGCTTCGATTCTTGGTTTGGCCATTGCTGGTCATCCACTTGTTTGGGCAGCTGTTCTTGCTGATGTTGGAACATGTCTAGTGGTCATCTTAAACAGCATGTTACTTCTTCAAAGAGGACACAAGCATGGTGGAAAATGTTGTAGATCTTCCACTAAACTACATATCCACAAGAAGGGATGTGATGGAACTAATGATAGTTCCTCTCATCATCATCATCATCATCAACATCATAGCCATAAGCATTGTTGCTCAGACAAGTCACAAAAGATGTCTCAGCCTCAGAAGTGTGCCTCCCAGACATGTTCCTCAAAGTTCCCGCCCTGTCCTTCTAATTCAAGTTTAGGTGGAAGTGTTAACCATCGTAATATCATGGAGAGTCATGATCAATGTAAGGGAAGTGAATTTCATGAAGCAGATCACTGTCATCATGGAAGATGTGACAAGAGTCAAGACGGATCCCAGAAGCATGATGCTGAAAATGAGGGTTGTTTAGATTCACACTATTTGATTCTAAATGCAGAACATAATGGTGCAGTTGCAATCAACAGAAAAGATAATTGTTTGGGGCACAAGGACCATGGGACAAAACACTGCCACAACCAAAATATTGACATGGTTTCTCATGATAGTGCTTCACTTACTTCTCCTTGCCATCTCAATATTTCTTGTCAAAAAGAAAGCCAACAATTTACTAATAAGCATTGCCACTTGATCCATGGTTGTGAAAAGCTGAAAGATCATGAATCCAAAAAAACGTTAGGATCCAATCATGACACTCAGCATAAAAAATCTGGTTGTCATTCTGATTCTAAGAAGTGTGAGACAGGTGAAATATCCATTGACATCGTCAATGAGCATGTTGAATCAGCCTTAATGCATGGTTGTCTAAGTTCTGAAGAGAAAGAAAATGGTTCCTGTTGTAAAGGCTGCTCAGACACATGCGAGAAATTGCCTGTTTTGTGTGCCTGTGAGAGTTCAAATGAGAAAGAAGTCAGTGCATGTTGCGGAAATGAGTGCTCTTCAAAAGATTCTAAGGAATCCCCTATAGTAAATGCTTGTATTAGTTTGGACAAGAGAGAAGTTGGTGGATGTTGCAAGAGCTACATGAAGGAATGTTGTGCCAAGCATGGGCACTCAGGGGCTGGTTTAGTGGGAGGTTTATCAGAAATTATTACAGAATAG 3180 0.4135 MSSQEKSKAGKKLQKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVVHDSLVISQLQIVKALNQARLEANIRVLGDAKHQKRWPSPYSVASGVLLLLSFLTFAYHPLKYVALGAVAAGVFPIILKVIVSIRNLRLDINILMIVAVIGTIVMNDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMNISPQKAVMAETGEVVDVDEVKVNTILAVKAGEVIPIDGIVLDGNCEVDEKTLTGESFPVAKLKDSTVWAGTINLNGYISVKTTALSEDCVVAKMAKLVEEAQNSKTSTQRLIDKFAKFYTPAVVVISALVAGIPILLKVHNEEQWLHFALVVLVSACPCALILSTPIATFCAYTTAATSGLLIKGGDNLETLAKIKVMAFDKTGTITKGEFVVTNFQSLSDDIDLNTLLYWVSSVESKASHPLAATIVDYGRSLSIEPKPEKVTEFENFPGEGICGKIDGRVLYIGNKKIATRAGSETGEFPTFQGESQRGKTIGYIYSGATPVGLFSLSDACRSGVQEAIEQLKLLGIKTAMLTGDSQSAAMQAQEQLGHALELVHAELLPEDKVKIISEFKKEGPTAMIGDGVNDAPALATADIGISMGISGSALASETGNVILMSNDIRKIPEAIKLARKSRRKVIENIIFSVITKASILGLAIAGHPLVWAAVLADVGTCLVVILNSMLLLQRGHKHGGKCCRSSTKLHIHKKGCDGTNDSSSHHHHHHQHHSHKHCCSDKSQKMSQPQKCASQTCSSKFPPCPSNSSLGGSVNHRNIMESHDQCKGSEFHEADHCHHGRCDKSQDGSQKHDAENEGCLDSHYLILNAEHNGAVAINRKDNCLGHKDHGTKHCHNQNIDMVSHDSASLTSPCHLNISCQKESQQFTNKHCHLIHGCEKLKDHESKKTLGSNHDTQHKKSGCHSDSKKCETGEISIDIVNEHVESALMHGCLSSEEKENGSCCKGCSDTCEKLPVLCACESSNEKEVSACCGNECSSKDSKESPIVNACISLDKREVGGCCKSYMKECCAKHGHSGAGLVGGLSEIITE 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00085 1059 Pfam haloacid dehalogenase-like hydrolase 392 612 - -
Gabi2179g00085 1059 ProSitePatterns Hypothetical cof family signature 2. 598 620 - -
Gabi2179g00085 1059 SUPERFAMILY HAD-like 395 699 IPR036412 -
Gabi2179g00085 1059 CDD P-type_ATPase_HM 99 700 - -
Gabi2179g00085 1059 MobiDBLite consensus disorder prediction 735 749 - -
Gabi2179g00085 1059 FunFam Putative cadmium/zinc-transporting ATPase 3 407 530 - -
Gabi2179g00085 1059 FunFam Copper-transporting ATPase 1, putative 185 299 - -
Gabi2179g00085 1059 ProSitePatterns E1-E2 ATPases phosphorylation site. 398 404 IPR018303 -
Gabi2179g00085 1059 MobiDBLite consensus disorder prediction 725 752 - -
Gabi2179g00085 1059 NCBIfam cadmium family heavy metal-translocating P-type ATPase 147 487 - -
Gabi2179g00085 1059 NCBIfam heavy metal translocating P-type ATPase 147 701 IPR027256 GO:0006812|GO:0016020|GO:0019829
Gabi2179g00085 1059 NCBIfam HAD-IC family P-type ATPase 170 417 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00085 1059 NCBIfam HAD-IC family P-type ATPase 505 674 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00085 1059 SUPERFAMILY Calcium ATPase, transmembrane domain M 147 487 IPR023298 -
Gabi2179g00085 1059 Pfam E1-E2 ATPase 206 374 - -
Gabi2179g00085 1059 SUPERFAMILY HMA, heavy metal-associated domain 11 80 IPR036163 GO:0046872
Gabi2179g00085 1059 SUPERFAMILY Calcium ATPase, transduction domain A 210 295 IPR008250 -
Gabi2179g00085 1059 Gene3D - 185 299 - -
Gabi2179g00085 1059 SFLD C1.7: P-type atpase like 379 650 - -
Gabi2179g00085 1059 PRINTS H+-transporting ATPase (proton pump) signature 598 614 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00085 1059 PRINTS H+-transporting ATPase (proton pump) signature 630 655 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00085 1059 Gene3D - 387 649 IPR023214 -
Gabi2179g00085 1059 Gene3D - 407 530 IPR023299 GO:0000166
Gabi2179g00085 1059 SFLD p-type atpase 379 650 IPR044492 -
Gabi2179g00085 1059 Gene3D - 10 83 - -
Gabi2179g00085 1059 PRINTS P-type cation-transporting ATPase superfamily signature 544 554 - -
Gabi2179g00085 1059 PRINTS P-type cation-transporting ATPase superfamily signature 598 617 - -
Gabi2179g00085 1059 PRINTS P-type cation-transporting ATPase superfamily signature 245 259 - -
Gabi2179g00085 1059 PRINTS P-type cation-transporting ATPase superfamily signature 396 410 - -
Gabi2179g00085 1059 PRINTS P-type cation-transporting ATPase superfamily signature 622 634 - -
Gabi2179g00085 1059 PRINTS P-type cation-transporting ATPase superfamily signature 522 533 - -
Gabi2179g00085 1059 ProSiteProfiles Heavy-metal-associated domain profile. 14 80 IPR006121 GO:0046872
Gabi2179g00085 1059 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 8 703 - -
Gabi2179g00085 1059 FunFam Putative cadmium/zinc-transporting ATPase 3 10 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00085 Gabi-Chr2179 888652 896900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00085 9 764 Primary Pumps ATPases AT4G30110 66.404 0.0 1049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00085 K01534 - gmx:100817567 1533.08