Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00065 ATGGCGGGTGCAATCAGCCTCGAGGAAATCAAGAACGAGACCGTTGATCTGGAACGTATTCCTATTGAGGAAGTGTTCGAGCAATTGAAATGTACCAGAGAAGGATTGTCCGCGGACGAAGGAGCCAATCGGCTTCAAATTTTTGGGCCAAACAAGCTAGAGGAGAAAAATGAAAGCAAATTACTCAAGTTTCTTGGGTTCATGTGGAATCCTCTGTCATGGGTCATGGAAGCTGCAGCTATAATGGCAATTGCTCTTGCAAATGGTGATGGGAAGCCCCCAGATTGGCAAGATTTTGTGGGTATTGTTTGCTTGTTGGTCATCAACTCCACTATCAGTTTCATTGAAGAAAATAATGCTGGTAATGCTGCTGCTGCTCTTATGGCTGGTCTTGCTCCCAAGACAAAGGTTCTTAGAGATGGTAAATGGACTGAGCAAGAAGCTGCAATTCTAGTCCCTGGAGATATCATAAGCATCAAACTAGGTGATATCATTCCTGCTGATGCTCGTCTTCTTGAGGGAGATCCTTTGAAGGTTGATCAATCCGCCTTGACCGGAGAGTCACTTCCTGTGACTAGGAATCCTGGGGATGAAGTTTTCTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCTGTTGTCATTGCAACTGGTGTCCACACATTTTTCGGGAAAGCAGCTCACCTGGTGGATAATACCAACCAAGTTGGACATTTCCAGATGGTGCTTACAGCAATTGGAAACTTCTGTATTTGTTCTATTGCAGTTGGTATAATTGCTGAGATTATAGTCATGTACCCAATTCAACACCGCAAGTACAGAGATGGAATTGACAACCTTTTGGTCCTCTTGATTGGAGGAATTCCCATTGCTATGCCCACTGTGTTGTCTGTGACAATGGCCATTGGTTCTCACAGGCTATCTCAGCAGGGTGCTATCACCAAGCGAATGACTGCCATTGAAGAAATGGCTGGTATGGATGTCCTCTGCAGTGACAAGACAGGTACACTCACACTTAACAAGCTGAGCGTCGACAAGAACTTGATTGAGGTCTTTGCAAATGGCGTGGACAAGGAACATGTGATGCTTCTTGCTGCAAGGGCTTCCAGGACTGAAAACCAGGATGCAATAGACGCTGCTATTGTTGGAATGCTTGCTGACCCAAAAGAGGCAAGGGCTGGGATAAGAGAGGTGCACTTCTTACCATTTAATCCTGTTGACAAGAGAACTGCTTTGACTTACATTGATGCTGATGGATATTGGCACCGGGCAAGCAAAGGTGCTCCTGAGCAGATCATGACCCTGTGTAACCTCAGGGAAGATACTAAGAAAAAGTGCCATGCTATTATTGACAAGTTTGCAGAGAGAGGGCTTCGTTCACTTGCTGTTGCTAGACAGGAAGTTCCTGAGAAAACAAAAGAAAGCGCAGGTGGTCCATGGCAGTTTGTTGGTTTGTTGCCACTGTTCGACCCCCCGAGGCATGACAGTGCTGAAACTATTCGTAGAGCTCTTCATCTTGGTGTAAATGTCAAGATGATTACTGGTGATCAACTTGCCATAGCTAAGGAGACTGGTAGGAGACTTGGGATGGGAACTAATATGTACCCATCTTCTACTTTGCTTGGTCAAGACAAAGATGCAAATATTGCTGCGCTTCCAGTAGAAGAGCTGATTGAGAAGGCAGATGGATTTGCTGGAGTATTTCCAGAGCACAAATATGAAATTGTAAAGAAGTTGCAAGAAAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTCAACGATGCTCCTGCTCTGAAAAAGGCTGATATTGGAATTGCTGTTGCTGATGCTACTGATGCTGCGAGAGGTGCTTCTGATATTGTCTTGACAGAACCTGGATTGAGTGTTATTATTAGTGCAGTCTTAACTAGCAGAGCTATTTTCCAAAGAATGAAAAACTATACGATATATGCAGTATCTATCACTATCCGTATAGTGTTTGGCTTCATGTTCATTGCACTGATCTGGAAATTCGACTTCTCTCCTTTCATGGTTTTGATTATTGCTATTTTAAATGATGGAACAATCATGACAATTTCAAAGGACAGGGTGAAGCCATCTCCCTTACCTGATAGCTGGAAACTGAAAGAAATATTTGCTACTGGGATTGTTCTTGGAAGTTACTTGGCACTGATGACTGTCATATTCTTCTGGGCAATGAAAGAAAACACCTTCTTCCCTGTAAGAAATATTCAACTAGCATATATTCAAGTTCTTGACAAATTTGGAGTTAGACACCTGACTCATGATGAAATGATGTCTGCTCTGTATCTACAAGTCAGTATAGTTAGCCAGGCTCTGATATTTGTAACCCGTTCCCGTAGCTGGTCCTTTCTAGAACGCCCTGGATTGCTCTTGGTCATTGCTTTCATTATTGCTCAGCTGATTGCTACAATCATAGCAGTTTATGCCGACTGGGGATTTGCAAAGGTCAAAGGAATTGGTTGGGGTTGGGCAGGAGTCATATGGCTCTACAGTGTTGTCTTCTATTTTCCACTTGACTTCTTGAAGTTTGCTATCCGCTACATCTTGAGTGGCAAGGCTTGGCTAAATATGCTAGAAAACAAGACTGCCTTCACCACCAAGAAAGACTATGGTAAGGAAGAGAGGGAAGCTCAGTGGGCTCTTGCTCAGAGGACCCTGCATGGACTTCAACCACCAGAAACTTCAAGTATTTTCAATGAAAAGAGCAGTTACAGAGAACTCTCTGAGATTGCTGAGCAAGCAAAGAGAAGAGCTGAAGTTGCAAGGCTTCGTGAGCTTAACACACTTAAGGGACATGTTGAGTCTGTGGTGAAGCTTAAAGGTCTGGACATTGATAACATCCAGCAGCACTACACTGTGTGA 2889 0.4372 MAGAISLEEIKNETVDLERIPIEEVFEQLKCTREGLSADEGANRLQIFGPNKLEEKNESKLLKFLGFMWNPLSWVMEAAAIMAIALANGDGKPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTRNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDNTNQVGHFQMVLTAIGNFCICSIAVGIIAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFANGVDKEHVMLLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDADGYWHRASKGAPEQIMTLCNLREDTKKKCHAIIDKFAERGLRSLAVARQEVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSTLLGQDKDANIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGSYLALMTVIFFWAMKENTFFPVRNIQLAYIQVLDKFGVRHLTHDEMMSALYLQVSIVSQALIFVTRSRSWSFLERPGLLLVIAFIIAQLIATIIAVYADWGFAKVKGIGWGWAGVIWLYSVVFYFPLDFLKFAIRYILSGKAWLNMLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSSIFNEKSSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDIDNIQQHYTV 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00065 962 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 858 IPR023298 -
Gabi2179g00065 962 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00065 962 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00065 962 PRINTS H+-transporting ATPase (proton pump) signature 771 792 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00065 962 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00065 962 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00065 962 SFLD p-type atpase 312 640 IPR044492 -
Gabi2179g00065 962 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Gabi2179g00065 962 CDD P-type_ATPase_H 35 852 IPR006534 GO:0008553|GO:0016020|GO:0120029
Gabi2179g00065 962 Gene3D - 911 962 - -
Gabi2179g00065 962 Pfam E1-E2 ATPase 132 309 - -
Gabi2179g00065 962 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Gabi2179g00065 962 SFLD C1.7: P-type atpase like 312 640 - -
Gabi2179g00065 962 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Gabi2179g00065 962 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Gabi2179g00065 962 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Gabi2179g00065 962 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Gabi2179g00065 962 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Gabi2179g00065 962 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Gabi2179g00065 962 Gene3D - 327 626 IPR023214 -
Gabi2179g00065 962 Gene3D - 342 489 IPR023299 GO:0000166
Gabi2179g00065 962 Coils Coil 913 933 - -
Gabi2179g00065 962 FunFam ATPase 4 plasma membrane-type 575 826 - -
Gabi2179g00065 962 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Gabi2179g00065 962 FunFam Plasma membrane ATPase 133 217 - -
Gabi2179g00065 962 NCBIfam plasma-membrane proton-efflux P-type ATPase 35 817 IPR006534 GO:0008553|GO:0016020|GO:0120029
Gabi2179g00065 962 Gene3D - 133 217 - -
Gabi2179g00065 962 FunFam Plasma membrane ATPase 342 489 - -
Gabi2179g00065 962 PANTHER CALCIUM-TRANSPORTING ATPASE 18 894 - -
Gabi2179g00065 962 FunFam Plasma membrane ATPase 482 637 - -
Gabi2179g00065 962 Gene3D - 95 826 - -
Gabi2179g00065 962 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Gabi2179g00065 962 SUPERFAMILY HAD-like 326 636 IPR036412 -
Gabi2179g00065 962 NCBIfam HAD-IC family P-type ATPase 102 349 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00065 962 NCBIfam HAD-IC family P-type ATPase 564 678 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2179g00065 962 Pfam Cation transporter/ATPase, N-terminus 20 82 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00065 Gabi-Chr2179 655861 662838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00065 6 962 Primary Pumps ATPases AT4G30190 83.165 0.0 1623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00065 K01535 - gmx:100816905 1737.24