Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00063 ATGGAGTGGGATAGCGATTCCGATCTAAGCGGAGACGACGAGGAGGAAGTGTTCGTCCTCAACAATGATGCCGATTGTCCTTTCCCTTTCCCTTTCCCCTTCGAGAACCTTCTCCAAACGTCGCCGTGTGGCTTCGTCGTCACCGATGCTCTCGAGCCCGATCACCCTATCATATACGTCAACACCGTCTTCGAGATGGTCACCGGCTACCGTGCCGAGGATGTCCTAGGTCACAACTGCCGCTTCTTGCAGTGTCGAGGTCCGTATGCCAAGAGAAGGCATCCGTTGGTGGACTCAACAGTAGTTTCAGAAATTAGAAGATGCCTTAAAGAGGGGATTGAATTCCAAGGTGAATTGTTGAACTTCAGGAAAGATGGATCTCCGCTGATGAACAGGTTGCGGCTGACACCTATATATGGAGATGATGAGACTATAACACATGTCATTGGAATCCAGTTCTTCACTGAGGCAAACATTGATCTTGGCCCTGTTATGGGTTCTACAATTAAGGAATCTGCTAAATCATTTGATCGATTTCGTTCTGTGCTATCCTCATTGCAACCTCTTCCAGTGGGGGATCGGAATGTATCTCGTGGAATTTGTGGGATATTGCAATTGAGTGATGAGGTACTCTCTCTCAAGATACTTGCTCGATTAACTCCTAGAGATATTGCATCTATTAGCTCTGTCTCTAGGCTATTGTATGAGCTGACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACCACACGTGTTTTAGAGACTGTGCCCGGGGCAAGGAGACTTGGATGGGTTCGGCTAGCAAGGGAATTGACCACTCTTGAAGCAGCAGCATGGAGTAAGTTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTTCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACATTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACACGTCCAGGTAGGCTCTCCTCCTCCTGGTCGTTGGGGCCACACGCTTTCTTGTGTTAATGGTTCTCTTTTGGTTGTATTTGGAGGCTGTGGAAGACAGGGCTTGCTCAACGATGTGTTTGTTCTGGATCTTGATGCAAAGCCCCCAACTTGGCGGGAAATTTCTGGATTGGCACCTCCACTTCCAAGATCATGGCATAGCTCCTGTACTCTAGATGGTACTAAGTTGATAGTTTCTGGGGGATGTGCAGACTCTGGAGTACTCTTGAGTGACACTTTCCTCCTTGATTTGTCAATGGAGAGGCCTGTCTGGAGAGAGATACCAGTGGCATGGACCCCGCCTTCTCGTCTGGGTCACACATTGTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCTTGCGTTTTCGTTCGAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAACCTTGCTGGAGATGTGTAACAGGGAGTGGAATGCCTGGTGCTGGAAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTTAGTCTTCCAGGTGGGAGAATTTTGATATTTGGCGGGTCTGTTGCAGGTCTTCACTCTGCCTCTCAGCTTTACATCCTTGATCCAACCGATGAGAACCCTACATGGAGAGTCCTTAATGTACCTGGATGCCCTCCGAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTGGGTGGTCAAACTGGAGAAGAATGGATGCTTAGCGAGCTCCATGAACTTTCTTTGGCAAGTTCTGTCATCTAG 1848 0.4789 MEWDSDSDLSGDDEEEVFVLNNDADCPFPFPFPFENLLQTSPCGFVVTDALEPDHPIIYVNTVFEMVTGYRAEDVLGHNCRFLQCRGPYAKRRHPLVDSTVVSEIRRCLKEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPVMGSTIKESAKSFDRFRSVLSSLQPLPVGDRNVSRGICGILQLSDEVLSLKILARLTPRDIASISSVSRLLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWVRLARELTTLEAAAWSKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVGSPPPGRWGHTLSCVNGSLLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMERPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDENPTWRVLNVPGCPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00063 615 Pfam PAS domain 42 152 IPR000014 -
Gabi2179g00063 615 Gene3D - 200 247 - -
Gabi2179g00063 615 Pfam F-box domain 203 245 IPR001810 GO:0005515
Gabi2179g00063 615 SUPERFAMILY PYP-like sensor domain (PAS domain) 37 152 IPR035965 -
Gabi2179g00063 615 Pfam Galactose oxidase, central domain 299 349 - -
Gabi2179g00063 615 Pfam Galactose oxidase, central domain 521 569 - -
Gabi2179g00063 615 Pfam Galactose oxidase, central domain 362 410 - -
Gabi2179g00063 615 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 31 612 - -
Gabi2179g00063 615 FunFam Adagio protein 1 32 163 - -
Gabi2179g00063 615 FunFam Putative LOV domain-containing protein 276 480 - -
Gabi2179g00063 615 FunFam Putative LOV domain-containing protein 481 614 - -
Gabi2179g00063 615 CDD F-box_AtADO-like 202 248 - -
Gabi2179g00063 615 SUPERFAMILY Kelch motif 453 608 IPR015915 GO:0005515
Gabi2179g00063 615 Pfam Kelch motif 456 507 IPR011498 GO:0005515
Gabi2179g00063 615 ProSiteProfiles PAS repeat profile. 34 112 IPR000014 -
Gabi2179g00063 615 CDD PAS 41 151 IPR000014 -
Gabi2179g00063 615 Gene3D PAS domain 28 163 - -
Gabi2179g00063 615 SUPERFAMILY F-box domain 195 265 IPR036047 GO:0005515
Gabi2179g00063 615 NCBIfam PAS domain S-box protein 34 151 IPR000014 -
Gabi2179g00063 615 SUPERFAMILY Kelch motif 285 503 IPR015915 GO:0005515
Gabi2179g00063 615 Gene3D - 504 614 IPR015915 GO:0005515
Gabi2179g00063 615 Gene3D - 275 503 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00063 Gabi-Chr2179 614297 620790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00063 44 153 AGC Kinase Gene Family AT5G58140 32.727 1.52e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00063 K12115 - gmx:100301887 1145.95