Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00062 ATGGAGTGGGATAGCGATTCCGATCTAAGCGGAGACGACGAGGAGGAAGTGTTCGTCCTCAACAATGATGCCGATTGTCCTTTCCCTTTCCCTTTCCCCTTCGAGAACCTTCTCCAAACGTCGCCGTGTGGCTTCGTCGTCACCGATGCTCTCGAGCCCGATCACCCTATCATATACGTCAACACCGTCTTCGAGATGGTCACCGGCTACCGTGCCGAGGATGTCCTAGGTCCGTATGCCAAGAGAAGGCATCCGTTGGTGGACTCAACAGTAGTTTCAGAAATTAGAAGATGCCTTAAAGAGGGGATTGAATTCCAAGGTGAATTGTTGAACTTCAGGAAAGATGGATCTCCGCTGATGAACAGGTTGCGGCTGACACCTATATATGGAGATGATGAGACTATAACACATGTCATTGGAATCCAGTTCTTCACTGAGGCAAACATTGATCTTGGCCCTGTTATGGGTTCTACAATTAAGGAATCTGCTAAATCATTTGATCGATTTCGTTCTGTGCTATCCTCATTGCAACCTCTTCCAGTGGGGGATCGGAATGTATCTCGTGGAATTTGTGGGATATTGCAATTGAGTGATGAGGTACTCTCTCTCAAGATACTTGCTCGATTAACTCCTAGAGATATTGCATCTATTAGCTCTGTCTCTAGGCTATTGTATGAGCTGACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACCACACGTGTTTTAGAGACTGTGCCCGGGGCAAGGAGACTTGGATGGGTTCGGCTAGCAAGGGAATTGACCACTCTTGAAGCAGCAGCATGGAGTAAGTTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTTCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACATTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACACGTCCAGGTAGGCTCTCCTCCTCCTGGTCGTTGGGGCCACACGCTTTCTTGTGTTAATGGTTCTCTTTTGGTTGTATTTGGAGGCTGTGGAAGACAGGGCTTGCTCAACGATGTGTTTGTTCTGGATCTTGATGCAAAGCCCCCAACTTGGCGGGAAATTTCTGGATTGGCACCTCCACTTCCAAGATCATGGCATAGCTCCTGTACTCTAGATGGTACTAAGTTGATAGTTTCTGGGGGATGTGCAGACTCTGGAGTACTCTTGAGTGACACTTTCCTCCTTGATTTGTCAATGGAGAGGCCTGTCTGGAGAGAGATACCAGTGGCATGGACCCCGCCTTCTCGTCTGGGTCACACATTGTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCTTGCGTTTTCGTTCGAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAACCTTGCTGGAGATGTGTAACAGGGAGTGGAATGCCTGGTGCTGGAAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTTAGTCTTCCAGGTGGGAGAATTTTGATATTTGGCGGGTCTGTTGCAGGTCTTCACTCTGCCTCTCAGCTTTACATCCTTGATCCAACCGATGAGAACCCTACATGGAGAGTCCTTAATGTACCTGGATGCCCTCCGAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTGGGTGGTCAAACTGGAGAAGAATGGATGCTTAGCGAGCTCCATGAACTTTCTTTGGCAAGTTCTGTCATCTAG 1818 0.4774 MEWDSDSDLSGDDEEEVFVLNNDADCPFPFPFPFENLLQTSPCGFVVTDALEPDHPIIYVNTVFEMVTGYRAEDVLGPYAKRRHPLVDSTVVSEIRRCLKEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPVMGSTIKESAKSFDRFRSVLSSLQPLPVGDRNVSRGICGILQLSDEVLSLKILARLTPRDIASISSVSRLLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWVRLARELTTLEAAAWSKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVGSPPPGRWGHTLSCVNGSLLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMERPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDENPTWRVLNVPGCPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00062 605 CDD F-box_AtADO-like 192 238 - -
Gabi2179g00062 605 ProSiteProfiles PAS repeat profile. 34 102 IPR000014 -
Gabi2179g00062 605 Pfam Kelch motif 446 497 IPR011498 GO:0005515
Gabi2179g00062 605 SUPERFAMILY Kelch motif 443 598 IPR015915 GO:0005515
Gabi2179g00062 605 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 31 602 - -
Gabi2179g00062 605 NCBIfam PAS domain S-box protein 34 141 IPR000014 -
Gabi2179g00062 605 Gene3D - 266 502 IPR015915 GO:0005515
Gabi2179g00062 605 Pfam PAS domain 42 142 IPR000014 -
Gabi2179g00062 605 SUPERFAMILY Kelch motif 275 493 IPR015915 GO:0005515
Gabi2179g00062 605 Pfam Galactose oxidase, central domain 511 559 - -
Gabi2179g00062 605 Pfam Galactose oxidase, central domain 289 339 - -
Gabi2179g00062 605 Gene3D - 190 237 - -
Gabi2179g00062 605 SUPERFAMILY PYP-like sensor domain (PAS domain) 37 142 IPR035965 -
Gabi2179g00062 605 Gene3D - 503 604 IPR015915 GO:0005515
Gabi2179g00062 605 FunFam Putative LOV domain-containing protein 266 470 - -
Gabi2179g00062 605 Pfam F-box domain 193 235 IPR001810 GO:0005515
Gabi2179g00062 605 CDD PAS 41 141 IPR000014 -
Gabi2179g00062 605 Pfam Galactose oxidase, central domain 352 400 - -
Gabi2179g00062 605 Gene3D PAS domain 28 153 - -
Gabi2179g00062 605 FunFam Putative LOV domain-containing protein 471 604 - -
Gabi2179g00062 605 SUPERFAMILY F-box domain 185 255 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00062 Gabi-Chr2179 614296 620790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00062 44 143 AGC Kinase Gene Family AT5G58140 29.703 2.23e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00062 K12115 - gmx:100301887 1116.68