Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00057 ATGAGGTTTATTCGAACAAACAGCTTGAAGAGGCTCTTTTCCTTGAGAAGACGGGGTTTGGAGGAACAAGTTCTCAGCCCGAACGGTTCAACTTGTGAAGAAAACAATGAGAGCTTGAAGATTCTTCCTTATGAAGAACCTTCTGAAAGACCCACTTGGAAATGCTTCTCTTATGAAGAATTGTTTGATGCAACCAGTGGCTTCAGCTCAGAAAATATGGTTGGAAAAGGAGGCTATGCTGAGGTTTACAAGGGAACACTGAAAGATGGTGAGGAAATTGCTGTGAAGAGGCTCACAAGAACTTGCAGAGATGAGAGGAAAGAGAAAGAGTTTTTAACAGAAATTGGAACAATTGGTCATGTTCGCCATTCCAACGTATTGCCTCTTCTGGGGTGTTGTATTGACAATGGTCTTTACCTCGTTTTTGAGCTATCCTCTAAAGGTTCTGTTGCATCTGTTCTACATGATGAAAAATTGACTCCAATGGATTGGAAAACAAGGCATAAAATAGCTCTTGGGACTGCACGTGGCCTCCACTACTTGCACAAAGGCTGCAAGAGGAGGATAATCCACCGGGACATCAAGGCATCAAACATTCTATTGACACTAGATTTTGAACCACAGATATCTGATTTTGGACTAGCAAAGTGGCTTCCATCTCAATGGACTCATCATTCAATTGCCCCAATAGAAGGGACATTTGGGCACTTGGCCCCTGAGTACTACTTGCATGGAGTTGTTGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCTTGCTAGAAGTCATCTCTGGGAGGAAACCGGTTGATGGGTCTCACCAAAGCTTACACAGCTGGGCTAAACCAATTTTGAACAAGGGTGAGATAGAACAGCTGGTAGATCCTAGGCTTGAAGGGGCTTATGATGTGACACAGTTAAAAAGACTTGCCTTTGCTGCCTCTCTCTGCATCAGGGCATCTTCAACTTGGAGACCTACCATGAGCGAGGTATTAGAGATAATGGAGGAGGGAGAGATTGATAAAGAGAAGTGGAAAATGCCAGAGGAAGAAGAAGAGCAAGAGGAAGAGTTTTGGGGTTTTGAGGATCTGGAATATGAATTTGACAGTTCCTTTTCAATGTCTTTGCCTGACTCCACTGGAAGTACTTAG 1152 0.4332 MRFIRTNSLKRLFSLRRRGLEEQVLSPNGSTCEENNESLKILPYEEPSERPTWKCFSYEELFDATSGFSSENMVGKGGYAEVYKGTLKDGEEIAVKRLTRTCRDERKEKEFLTEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSSKGSVASVLHDEKLTPMDWKTRHKIALGTARGLHYLHKGCKRRIIHRDIKASNILLTLDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGEIEQLVDPRLEGAYDVTQLKRLAFAASLCIRASSTWRPTMSEVLEIMEEGEIDKEKWKMPEEEEEQEEEFWGFEDLEYEFDSSFSMSLPDSTGST 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00057 383 Pfam Protein tyrosine and serine/threonine kinase 71 332 IPR001245 GO:0004672|GO:0006468
Gabi2179g00057 383 Gene3D Transferase(Phosphotransferase) domain 1 146 361 - -
Gabi2179g00057 383 ProSiteProfiles Protein kinase domain profile. 68 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2179g00057 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Gabi2179g00057 383 SUPERFAMILY Protein kinase-like (PK-like) 48 335 IPR011009 -
Gabi2179g00057 383 Gene3D Phosphorylase Kinase; domain 1 43 144 - -
Gabi2179g00057 383 FunFam Putative receptor-like serine/threonine-protein kinase 35 144 - -
Gabi2179g00057 383 ProSitePatterns Protein kinases ATP-binding region signature. 74 96 IPR017441 GO:0005524
Gabi2179g00057 383 Coils Coil 95 115 - -
Gabi2179g00057 383 FunFam Putative receptor-like serine/threonine-protein kinase 146 360 - -
Gabi2179g00057 383 SMART serkin_6 68 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2179g00057 383 PANTHER OS08G0249100 PROTEIN 45 365 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00057 Gabi-Chr2179 591077 594563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00057 54 346 Receptor kinase-like Gene Family AT1G60800 44.850 1.35e-72 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi2179g00057 PK_Tyr_Ser-Thr 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00057 - - gmx:100305398 671.003