Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00054 ATGGCTACGGAATCGTCTTTTGAGGGTGTTACACTTGATCCTTCTAAATGCAGTAAGTTGAGTATGGAGGAAAAACGGGAACTTGTATATGAAATATCTAAGTGGTCTCATGGTGCATCCGAGATGCTGCAGTCATGGAGCCGTCAAGAGATTTTGCAAATATTGTGTGCGGAGATGGGAAAAGAAAGGAAGTATACTGGGCTGACAAAGTTGAAAATTATAGAAAACCTTTTAAAAATTGTTTCTGAAAAGAAATCAGGAGGCCATGAAATTGCATCAGACCCTGAACCACATTCTTTTTCTGCACATGGTCAGAAACCAGCTAAAAGGCAGAGAAAAAGTGATAATCCATCTCGATTGCCTGTTCCTGAGAACAATGTTTCAGACAATAATGGCGGTGATGTGGGTAATAGTAATACCACATACTGCAAAAACTCAGCTTGCAAAGCTACACTAAATCAAGCAGATGCATTCTGCAAAAGGTGTTCATGCTGCATTTGTCATCAATTTGATGACAACAAAGACCCTAGCCTATGGTTAATATGTAGCTCTGAGACTCCTTTTCCTGGTATTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCTGGAATTGGCAAAGATGGTGAGCGTCCTAAGCTTGATGGAGGCTTCTACTGTGTATCTTGTGGGAAGATAAATGATTTACTCGGATGCTGGAGAAAACAACTGACAGTAGCGAAGGATGCCAGACGTGTAGATGTACTCTGTTATCGCGTCTCCTTAAGCCAGAGACTTCTACAAGGGACTGAAATGTATCAAAAACTTTATGAAATTGTTGATGAAGCCGTGAAGAAACTTGAACCTGAAGTGGGTCCACTGATTGGCTCACCAATGAAGATTGGTAGGGGGATTGTGAACAGGCTTTCGTCAGGACCCGAGGTTCAGAAACTCTGTGGTTTTGCTCTGGAATCACTTGATTCACTGCTTTCTAAAAGGATCTTGCCTTTGTCACCTAATCCAACAATTCAAGATGCACATTTGCTGGCTCCAAATATTGTGAGGTTTGAAAATGTCACTGCAACAACCCTTACTGTTATTTTGGGTTCTGAAGATCGTTCTGGAGAAAATATTGCGGGTTACACCTTGTGGCATCGCAAAGCTGATGATGCGGACTATCCAGTGGACCCAACTTGCACTATGCTCCTACCAAGTAGAAGGTTCAGTATCAGAGGTCTTATTCCAGCTACAGAGTACAGTTTCAAAGTTGTTTCCAATGATTCGAGGGAGTTGGGTATGTGTGAAGTTCAATTCTCAACAGAGCATGGTGAGGATGAAGTCCCTAATTGCTCAGCAACAGAAAGGAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCGTCATCAGTGGAAGACGAAACTAATAACAGTAATCCATACAGTGACCAGACTGATAATCGAGCCGATAATTACCATTCGTATCACAAGGATAGTAACCAGCTTGCTTCTGGAAATTTATCTAATGGTGCTATTAACTGTTCCAATATAGTTCCCACGGATGCAGATTCTTTGTCAGACAAGCAGAATGCTGTAGGAATGGCTGTCTCCATACCTAGTTCTGATATATTAAAGCTTGAAAACAAGCATTCATCAGAGGAACAAGTCACTGAGGAAATGAGCACTGATGATGGTTTGAATTCCCCAGTACTAACGGGGAGGGAATGTGTGCCATTAATCGGTAGTGCAGAAGGAGGCTTGCCTAATACTCCATGCAAGTTGGAATTACTGAAGGATGGACCAGGAAGAAATGGGAGATCTAAAACCAGTGGCAAAGATCTAGAAAATGGATCCGGGAAAAGGGAGGGACCCCAAGATGGAAGCACATCCAAGAAGAGAAGTGGGGAAAGGCAAGACGAAGGTGGTGCAGCCAATGGTTTTTCAGATAGGGATTTTGAGTATTATGTGAAGGTGATTAGATGGTTAGAGTGTGAAGGACACATAGAAAAGAACTTCAGACAGAAATTTCTGACTTGGTACAGCTTAAGGGCAACCCCTCAAGAAGTAAGGATTGTGAAAATATACATTGATACATTCCTTGAAGATCCAGCATCTCTTGCTGAGCAACTTGTTGACACCTTCTCAGAATGTATATCAAGCAAGAGAACATCAGTGGTGCGGGCAGGGTTCTGCATGAAGCTTTGGCACTGA 2208 0.4248 MATESSFEGVTLDPSKCSKLSMEEKRELVYEISKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHEIASDPEPHSFSAHGQKPAKRQRKSDNPSRLPVPENNVSDNNGGDVGNSNTTYCKNSACKATLNQADAFCKRCSCCICHQFDDNKDPSLWLICSSETPFPGISCGLSCHLECALKHDGSGIGKDGERPKLDGGFYCVSCGKINDLLGCWRKQLTVAKDARRVDVLCYRVSLSQRLLQGTEMYQKLYEIVDEAVKKLEPEVGPLIGSPMKIGRGIVNRLSSGPEVQKLCGFALESLDSLLSKRILPLSPNPTIQDAHLLAPNIVRFENVTATTLTVILGSEDRSGENIAGYTLWHRKADDADYPVDPTCTMLLPSRRFSIRGLIPATEYSFKVVSNDSRELGMCEVQFSTEHGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNSNPYSDQTDNRADNYHSYHKDSNQLASGNLSNGAINCSNIVPTDADSLSDKQNAVGMAVSIPSSDILKLENKHSSEEQVTEEMSTDDGLNSPVLTGRECVPLIGSAEGGLPNTPCKLELLKDGPGRNGRSKTSGKDLENGSGKREGPQDGSTSKKRSGERQDEGGAANGFSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRTSVVRAGFCMKLWH 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00054 735 MobiDBLite consensus disorder prediction 442 487 - -
Gabi2179g00054 735 MobiDBLite consensus disorder prediction 88 133 - -
Gabi2179g00054 735 Pfam Fibronectin type III domain 348 423 IPR003961 GO:0005515
Gabi2179g00054 735 CDD PHD_VIN3_plant 163 228 - -
Gabi2179g00054 735 CDD FN3 348 430 IPR003961 GO:0005515
Gabi2179g00054 735 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 735 IPR044514 GO:0010048|GO:0040029
Gabi2179g00054 735 Gene3D Immunoglobulins 347 444 IPR013783 -
Gabi2179g00054 735 MobiDBLite consensus disorder prediction 589 644 - -
Gabi2179g00054 735 MobiDBLite consensus disorder prediction 547 569 - -
Gabi2179g00054 735 MobiDBLite consensus disorder prediction 118 133 - -
Gabi2179g00054 735 MobiDBLite consensus disorder prediction 598 644 - -
Gabi2179g00054 735 MobiDBLite consensus disorder prediction 438 501 - -
Gabi2179g00054 735 SUPERFAMILY Fibronectin type III 348 426 IPR036116 GO:0005515
Gabi2179g00054 735 ProSiteProfiles Fibronectin type-III domain profile. 348 443 IPR003961 GO:0005515
Gabi2179g00054 735 Pfam PHD - plant homeodomain finger protein 143 262 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00054 Gabi-Chr2179 563670 568898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00054 4 488 PHD Gene Family AT4G30200 54.511 7.59e-168 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00054 - - gmx:100794721 1310.82