Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00053 ATGGACTCATCCTCTTCGCCGCACAACAACAACAACAACAACAACAACTCACTTGGTTTCTCTCTTTCCAATCACTTTCATAATCCTTCATCTTCACACTCTTCCTCTCATCTCTCCCTTTTCAACTCCTTCACCTATCCTTCCACCACACCATCTCTCACACTCACAGGCAGCAACACGGTGGACGCATCACCGGAGGCAACAGACTGCACCGCCGGAGGAGCAACCAACCTCTCTATATTCACCGGCGTACCCAAGTTCGAGGACTTCCTTGGCGGCTCAACCACAACAGCCGCCACGTGTGCACCGCCACAGCTTCCGCAGTTCTCAACCGACAACGACATATACGATTCGGAGCTGAAGACAACAATAGCCGCATGCTTCCCTCGCGGCTTCGCCGCCGAAGCAATCACCGAGTCACAAAAGCCATCCTCCAAGAAAACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACTCGACACAGATGGACTGGGAGATACGAAGCTCATTTATGGGATAACAGTTGCAGAAGGGAAGGGCAAAGCAGGAAAGGAAGACAAGTTTATTTGGGTGGCTACGACAAGGAAGAGAAGGCAGCCAGAGCTTATGATCTCGCAGCTCTCAAGTACTGGGGTCCAACAACAACCACCAACTTTTCAATTTCCAACTATGAGAAGGAACTGGAGGACATGAAGAACATGACAAGGCAAGAGTTTGTTGCTTCTCTACGAAGGAAGAGCAGTGGTTTCTCTAGAGGGGCCTCTATGTACAGAGGAGTGACAAGGCACCACCAGCATGGCCGATGGCAGGCAAGGATAGGCAGAGTAGCCGGAAACAAAGACCTCTATCTTGGAACTTTCAGCACTCAAGAAGAAGCTGCGGAGGCCTATGACATTGCAGCTATCAAATTCAGAGGACTAAATGCAGTCACAAACTTTGACATGAGTCGCTACGACGTTAAGAGCATTGCAAGTAGCACCCTTCCAATTGGTGGTTTATCTAGCAAGAACAAAAACTCCACAGATTCTCTATCTGATGGCAGAAGCCATGAGGCAAGTCGATCAGATGAACGAGATCCATCTTCATCTTCATCTTCATCTGTGACCTTTGCATCGCAACAACCTTCAAGCTCTACCCTTAGCTTTGCCATACCGATAAAGCAAGACCCTTCTTCAGATTACTGGTCCATTCTCGGGTATCACAATCCTCCCCTTGACAGTGCCATAAAGAACACTAACACTAGTGTTACTGCTACTACTAATACAACTTATTTTCCATCTTCCAACATTGGCACTGCATTGCAGTGTTCCAATACCACACCCTTCCACATGGAGTTCTCTAATGCCCCCTCAAATACCAGCAGTGATAACAATGCCGCGTTTTTCAGTGGAGGCATCTTTGTTCAGCAACAAAGTGGAAGCAGTGGTGGTGGTTCTTCTTCAAGTTCAATCCCATTCGCCACGCCCATATTTTCTTTAAATAGTAACAGTAGTTATGAGAACAACCCTGGTTATGGAAACTGGATTGGACCTAACCTGCACACATTCCAAACACATGCAAAACCAAGTCTCTTTCAAACGCCAATATTTGGCATGGAATGA 1614 0.4783 MDSSSSPHNNNNNNNNSLGFSLSNHFHNPSSSHSSSHLSLFNSFTYPSTTPSLTLTGSNTVDASPEATDCTAGGATNLSIFTGVPKFEDFLGGSTTTAATCAPPQLPQFSTDNDIYDSELKTTIAACFPRGFAAEAITESQKPSSKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFSISNYEKELEDMKNMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIASSTLPIGGLSSKNKNSTDSLSDGRSHEASRSDERDPSSSSSSSVTFASQQPSSSTLSFAIPIKQDPSSDYWSILGYHNPPLDSAIKNTNTSVTATTNTTYFPSSNIGTALQCSNTTPFHMEFSNAPSNTSSDNNAAFFSGGIFVQQQSGSSGGGSSSSSIPFATPIFSLNSNSSYENNPGYGNWIGPNLHTFQTHAKPSLFQTPIFGME 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00053 537 ProSiteProfiles AP2/ERF domain profile. 158 224 IPR001471 GO:0003700|GO:0006355
Gabi2179g00053 537 FunFam AP2-like ethylene-responsive transcription factor ANT 157 226 - -
Gabi2179g00053 537 CDD AP2 157 226 IPR001471 GO:0003700|GO:0006355
Gabi2179g00053 537 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Gabi2179g00053 537 PRINTS Ethylene responsive element binding protein signature 300 320 IPR001471 GO:0003700|GO:0006355
Gabi2179g00053 537 FunFam AP2-like ethylene-responsive transcription factor 259 320 - -
Gabi2179g00053 537 Gene3D AP2/ERF domain 260 320 IPR036955 GO:0003700|GO:0006355
Gabi2179g00053 537 Gene3D AP2/ERF domain 158 226 IPR036955 GO:0003700|GO:0006355
Gabi2179g00053 537 SUPERFAMILY DNA-binding domain 259 320 IPR016177 GO:0003677
Gabi2179g00053 537 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2179g00053 537 Pfam AP2 domain 261 310 IPR001471 GO:0003700|GO:0006355
Gabi2179g00053 537 Pfam AP2 domain 158 216 IPR001471 GO:0003700|GO:0006355
Gabi2179g00053 537 SUPERFAMILY DNA-binding domain 157 226 IPR016177 GO:0003677
Gabi2179g00053 537 MobiDBLite consensus disorder prediction 347 362 - -
Gabi2179g00053 537 MobiDBLite consensus disorder prediction 333 376 - -
Gabi2179g00053 537 ProSiteProfiles AP2/ERF domain profile. 260 318 IPR001471 GO:0003700|GO:0006355
Gabi2179g00053 537 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 108 411 - -
Gabi2179g00053 537 SMART rav1_2 260 324 IPR001471 GO:0003700|GO:0006355
Gabi2179g00053 537 SMART rav1_2 158 230 IPR001471 GO:0003700|GO:0006355
Gabi2179g00053 537 CDD AP2 259 320 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00053 Gabi-Chr2179 530898 534089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00053 93 537 AP2-EREBP Transcription Factor Family AT5G57390 54.202 1.13e-143 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi2179g00053 AP2 4.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00053 K09285 - gmx:100797828 741.11