Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00052 ATGTATTCGAGCCAGTTCGACGGAAACGCAGCCTTCTCCGGCGGCGGATTCATGCCCTCACAGGCTACTCCGGGCCCTGACACTTCCTTCCTATCTTCCAAGAATCGTGATGCCCAGTCCTTGCTTCCTCTGACAGTCAAGCAAATAAACGATGCGTTTCATTCAAGTGATGATAAAACCAATTTGATTATTGATGGTGTGGACGTTAACAATGTTACTCTTGTAGGAAGGATATGCAATAAAGCTGGAAGGATTACTGATGTTACTTTTGTACTTGATGATGGTACTGGAAGGATTGAGTGTAGTAAATGGCTTCAGGAAGCTGTAGATACAAATGAAGTGGAGGGACTCTTGGATGGAATGTATGTGCGGCTCCATGGACACTTGAAAGGTTTTCAGGGTAAAAGGACCTTAAATGTTTTCTCTTTTAGGCCTGTGACTGACTTTAACGAAATTGCCAGCCATTTCATTGATTGCATATATGTCCATCTCTATAATTCCAGGTTACGGGCTGGCGTCCCAAGTCAGCAACATGTTACTAATTCTGCACCAATTACTCCCACAAAAGGTTATCAAGCTCCAGCTGTCCCACCAAATCAATTCTCCGGTCAACATAACAATGGTCAGAAGAGTGTTGAAGATATGGTCTTAGAGGTTTTGCATCTTCCCGCAAACAGGGCAAGGGATGAGGGAGTCCCTCGTGATCTTATTGCGCAGCATCTTGGAATTCCTTTGGATAAGCTCATGCTGGCTATTAAAAATCTTATAGAGGAAGGTGCCATTTATGAAGCTATAGGTGATCACTATAAGTCAATCATCAATGGTTGA 828 0.4336 MYSSQFDGNAAFSGGGFMPSQATPGPDTSFLSSKNRDAQSLLPLTVKQINDAFHSSDDKTNLIIDGVDVNNVTLVGRICNKAGRITDVTFVLDDGTGRIECSKWLQEAVDTNEVEGLLDGMYVRLHGHLKGFQGKRTLNVFSFRPVTDFNEIASHFIDCIYVHLYNSRLRAGVPSQQHVTNSAPITPTKGYQAPAVPPNQFSGQHNNGQKSVEDMVLEVLHLPANRARDEGVPRDLIAQHLGIPLDKLMLAIKNLIEEGAIYEAIGDHYKSIING 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00052 275 Pfam OB-fold nucleic acid binding domain 72 143 IPR004365 GO:0003676
Gabi2179g00052 275 SUPERFAMILY "Winged helix" DNA-binding domain 207 271 IPR036390 -
Gabi2179g00052 275 PIRSF RPA32 1 273 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi2179g00052 275 SUPERFAMILY Nucleic acid-binding proteins 41 167 IPR012340 -
Gabi2179g00052 275 PANTHER REPLICATION PROTEIN A-RELATED 5 272 IPR040260 -
Gabi2179g00052 275 FunFam replication protein A 32 kDa subunit A-like 34 168 - -
Gabi2179g00052 275 Gene3D - 204 273 IPR036388 -
Gabi2179g00052 275 Pfam Replication protein A C terminal 163 267 IPR014892 -
Gabi2179g00052 275 CDD RPA2_DBD_D 71 164 - -
Gabi2179g00052 275 Gene3D - 33 168 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00052 Gabi-Chr2179 514287 518889 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00052 3 272 Core DNA Replication Machinery Family AT2G24490 45.848 2.62e-78 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00052 K10739 - qsa:O6P43_022320 441.039