Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00045 ATGAACAGTTTTGACCCCCAAAGACAAGATTCCAGCTTAAAACGGAGATGGCAAGATAGAAGACAGATTATTACGGGTGCACCTTCAAATTCTTCTTCTTTGGCTTTCTATGCTAATAATAGCAACAACACCAGCAGCATGGCCAAGTATAGCAACAAATTTCAAAGCTTCTCTGTTCTTGAAGATGATGATCTTGTCTCAAGTGTAGTCCCTGCAGTTACTGTTGTTCTAGAGGGTCGTTCGATCTGTCAACGCATCAGCCTCCATAACCATGCTAGCTACCAAAGTCTAGCCAAGGCTCTCCGGCAGATGTTTGTGGATGTTTCCGACGCCGGAGGGAACTCGGAGATTCATGATGATCTTGATCTGTCCAATGCTATTCCTGGTCACGTTATTGCCTATGAAGACATGGAGAATGATCTTCTTCTAGCTGGTGACCTTAGCTGGAAGGATTTTGTACGTGTGGCAAAGAGAATTCGGATACTTCCGATCAAGGGGAACTCAAGGAAAGGTACACACACAACAAGTACAAGAGAGGCATGA 543 0.4438 MNSFDPQRQDSSLKRRWQDRRQIITGAPSNSSSLAFYANNSNNTSSMAKYSNKFQSFSVLEDDDLVSSVVPAVTVVLEGRSICQRISLHNHASYQSLAKALRQMFVDVSDAGGNSEIHDDLDLSNAIPGHVIAYEDMENDLLLAGDLSWKDFVRVAKRIRILPIKGNSRKGTHTTSTREA 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00045 180 Gene3D - 67 175 - -
Gabi2179g00045 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 56 163 IPR003311 GO:0005634|GO:0006355
Gabi2179g00045 180 ProSiteProfiles PB1 domain profile. 70 166 IPR000270 GO:0005515
Gabi2179g00045 180 Pfam AUX/IAA family 56 162 IPR033389 -
Gabi2179g00045 180 SUPERFAMILY CAD & PB1 domains 83 162 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00045 106 162 B3 DNA Binding Superfamily AT1G19220 34.848 4.19e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gabi2179g00045 AUX_IAA 8.8e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00045 - - ahf:112698078 206.453