Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00038 ATGGATACTGATGAGGAGTGTTCAATTGTTCTTGAGCTATCTGAAAATGATCCTTTCTTTGATGAAAAGAAGAAATTACTACAAAGTCAGGGTTTTAGTCCCAAGGAACGGATATATCTCAGGAGCTCCTCAAAACCTGGTTGGATGAGTGATACTGTAAAGGTGTTGCTTCAGATTGCACGAATCATACAGTTAAATGAGCTGGAACTTTATTTTGCTGAAGACGATGCATGCACATCAGTGGAGATTTACAGCCCCAGGAATGAGTTGGAGGCTCTCAATTCAATTGTTTTGCTTACCGACATGTCACTTTCTAGCTGTACACATCTCGATACAAATATCCTGCAAAGGTTACGGGAAACGATTATCGATTTTATTTCTGATTTTGGGGACAAGAACAGTGTGAAGGGAGTAATTGACAGAGATCGCAGTTGTTACCAAGAAGAGCGCCTGATAGAATGGGGTGAAAGCAATGGTGTAAAAACAGAGATAAAGATAGCTTATGTTGAAGGAGAGGGTAGAGGTGCGATAGCAAGGAAAGATCTAAAAGTTGGGGACATTGCTTTAGAAATTCCATTGTCCATTATAATTTCTGAGGAGCTTGTGCATGAAACCGATATGTATCGTGTCTTAAAAGAAGTTGATGGCATATCATCCGAGACAATATTGCTATTATGGAGTATGAAAGAGAAGTACAACTGTGATTCAAAATTCAAAATTTACTTTGACACACTCCCCGAAAAATTTAATACAGGATTGAGTTTTGGCTTTGAAGCAATTACAATGTTAGATGGAACCTTGCTGTTGGAAGAGATAATACATGCAAGACAGCACCTGCATGCTCAATATGCTGAGTTGTTCCCCACTCTGAGCAATGATTTTCCTGATATATTTCCACCAGAGCTGTACACATGGGATAAATTTTTTTGGGCTTGTGAACTTTGGTACTCCAATAGCATGCAGATAATGTATTCCGATGGAAAGCTGAGAACATGCTTGATCCCGATTGCTGGCTTTCTTAATCATTCACTATGCCCACATGTTATGCACTATGGCAAAGTAGATACTGCAACAGATTCATTGAAATTTTGTCTATCAAGACCATGCAGATCTGGAGAAGAATGCTACTTAAGCTACGGAAACTTCCCGAGTTGTCATCTAATTACCTTTTATGGTTTCTCACCCCAAGGAGACAACCCATATGATTTCATTCCATTAGAGATTGGTGGTTCTGGTCTCGATTCTATTGAGGATACACCCGTGTCCAACGTGACGGCTCACATGGTGCGAGGTACTTGGCTCTCCAACAATCACAGCATATTCTATTATGGCCTTCCTTCTTCATTATTGGATCATCTTCGGAGATCTCGAAATCCCATGCTGCAAACTAAGACTTTCTTGCAAGGAAACTTGGAAAATGAGGTGGAAATTCTTGAGAATCTTATATATATCTTTGATGACATGATGGTCATTATGGGTGAGATCGATCTTGATAACAGAGAAAGCTGCAATTGGGATAAAAAGTTGGCTATGGATTTTCGTAGTCTACAAAGACGAATTGCCAATTCTGTTTTAACTTCATGTCATACTGGAGTCTGCTTGTTGAAGAATGAACTACAAAAGTGCATGGCCGAGGACATCCGGGGCTAA 1650 0.3982 MDTDEECSIVLELSENDPFFDEKKKLLQSQGFSPKERIYLRSSSKPGWMSDTVKVLLQIARIIQLNELELYFAEDDACTSVEIYSPRNELEALNSIVLLTDMSLSSCTHLDTNILQRLRETIIDFISDFGDKNSVKGVIDRDRSCYQEERLIEWGESNGVKTEIKIAYVEGEGRGAIARKDLKVGDIALEIPLSIIISEELVHETDMYRVLKEVDGISSETILLLWSMKEKYNCDSKFKIYFDTLPEKFNTGLSFGFEAITMLDGTLLLEEIIHARQHLHAQYAELFPTLSNDFPDIFPPELYTWDKFFWACELWYSNSMQIMYSDGKLRTCLIPIAGFLNHSLCPHVMHYGKVDTATDSLKFCLSRPCRSGEECYLSYGNFPSCHLITFYGFSPQGDNPYDFIPLEIGGSGLDSIEDTPVSNVTAHMVRGTWLSNNHSIFYYGLPSSLLDHLRRSRNPMLQTKTFLQGNLENEVEILENLIYIFDDMMVIMGEIDLDNRESCNWDKKLAMDFRSLQRRIANSVLTSCHTGVCLLKNELQKCMAEDIRG 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00038 549 SUPERFAMILY SET domain 149 401 IPR046341 -
Gabi2179g00038 549 FunFam SET domain-containing protein 4 141 - -
Gabi2179g00038 549 Gene3D - 2 118 IPR036464 -
Gabi2179g00038 549 CDD SET_LSMT 164 393 - -
Gabi2179g00038 549 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 147 477 - -
Gabi2179g00038 549 FunFam Transcription factor, E2F and DP-related 146 394 - -
Gabi2179g00038 549 Pfam SET domain 173 380 IPR001214 GO:0005515
Gabi2179g00038 549 ProSiteProfiles SET domain profile. 162 380 IPR001214 GO:0005515
Gabi2179g00038 549 Gene3D set domain protein methyltransferase, domain 1 146 393 - -
Gabi2179g00038 549 Pfam Rubisco LSMT substrate-binding 15 104 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00038 Gabi-Chr2179 393026 403156 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi2179g00038 SET 9.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00038 K19199 - gmx:100778605 925.235