Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00030 ATGTGGGACATTACAATGCACGACTTCATTTTCCGTTCCAAACTCCCCGACATTTACATCCCAACGCACCTCCCACTCCACACTTACTGCTTCGAAAACCTGTCCCAATTCAAACACCGTCCCTGCCTCATCAACGGCAACACCGGCGAGACATTCAACTACGCCGCCGTTGAACTCACCGCCCGCAAAGTCGCCGCCGGACTCTACAAGCTCGGCATCCAACAAGGCGATGTCATCCTCCTCCTCCTCCAGAACTGCCCCCAATTCGTCTTCGCATTCCTCGGAGCCTCGTACCTCGGCGCCGTCGTCACCACGGCCAACCCGTTCTACACTCCGGCGGAGGTGGCAAAACAGGCGACGGCGTCGAACTCCAAGCTGATCATAACACAATCGTCCTACGTCGACAAAGTTAAGGATTTCGCGAGAGACAATGAAATCAAAGTGGTGTGCATTGACTCGCCGCCGGAAGGTTACTTGCACTTCTCGGAGTTGACGGAGGCCGACGAGGGTGAAATCCCCGCCGTGAAAATATCACCAGACGACGTCATCGCGCTGCCGTATTCGTCTGGGACGACGGGGCTTCCGAAGGGGGTGATGCTAACACACAAAGGGTTAGTTACGAGCGTGGCGCAACAGGTTGACGGAGAGAACCCTAATCTGTATTTTAACAGCGAGGATGTGGTTATTTGCGTGCTGCCACTTTTCCACATTTATTCTCTTAACTCTGTTTTGTTGTGTGGGCTTCGAGTTGGAGCTTCGATTTTAATCATGCAGAAATTCGAGATCATTACGCTGCTGGAGTTGGTTGAGAAACACAAGGTCACCATTGCGCCGTTTGTGCCTCCCATAGTTTTGGCGATTGCCAAGAGTCCTGACATCGACCGATACGACCTGTCGTCCATTCGGATGGTTATGTCTGGTGCCGCACCCATGGGAAAGGAACTTGAGGATGCTGTGAGGGCCAAGCTTCCCAACGCTACACTCGGACAGGGTTACGGGATGACAGAGGCAGGACCAGTGCTAGCAATGTGCTTAGCGTTTGCGAAGGAACCATTGGAGGTGAAATCAGGTGCGTGCGGGACCGTGGTAAGAAATGCGGAGATGAAGATCGTTGACCCTGAGACTGGCGCTTCGCTTCCGAGGAATCAAGCCGGTGAGATTTGCATTAGAGGCAACCAGATCATGAAAGGTTACCTAAACGACCCAGAGGCCACAGAAAGAACTGTAGACAAAGGGGGATGGTTGCACACGGGTGATATTGGTTATATCGATAATAATGATGAACTTTTCATCGTTGATCGGTTAAAGGAGTTGATCAAATACAAAGGATTTCAAGTAGCTCCAGCTGAGCTCGAAGCCATGCTGATTGCTCACCCAAACATTTCTGATGCTGCTGTTGTATCCATGAAAGATGAGGTTGCCGGAGAGGTTCCGGTTGCATTTGTTGTACGATCAAACGGTTCTAAAGTCTCAGAGGATGAAATCAAGCAATACATCTCAAAGCAGGTTGTGTTTTACAAGAGAATCAGTAGGGTTTTCTTTGTGGGCTCAATCCCAAAGGCACCTTCAGGCAAGATTTTGCGGAAAGACCTCAGGGCGAGGCTTGCAGCTGGTACTGCCATGTAG 1626 0.5098 MWDITMHDFIFRSKLPDIYIPTHLPLHTYCFENLSQFKHRPCLINGNTGETFNYAAVELTARKVAAGLYKLGIQQGDVILLLLQNCPQFVFAFLGASYLGAVVTTANPFYTPAEVAKQATASNSKLIITQSSYVDKVKDFARDNEIKVVCIDSPPEGYLHFSELTEADEGEIPAVKISPDDVIALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFNSEDVVICVLPLFHIYSLNSVLLCGLRVGASILIMQKFEIITLLELVEKHKVTIAPFVPPIVLAIAKSPDIDRYDLSSIRMVMSGAAPMGKELEDAVRAKLPNATLGQGYGMTEAGPVLAMCLAFAKEPLEVKSGACGTVVRNAEMKIVDPETGASLPRNQAGEICIRGNQIMKGYLNDPEATERTVDKGGWLHTGDIGYIDNNDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPNISDAAVVSMKDEVAGEVPVAFVVRSNGSKVSEDEIKQYISKQVVFYKRISRVFFVGSIPKAPSGKILRKDLRARLAAGTAM 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00030 541 Pfam AMP-binding enzyme C-terminal domain 450 525 IPR025110 -
Gabi2179g00030 541 CDD 4CL 20 531 - -
Gabi2179g00030 541 Gene3D - 436 538 IPR045851 -
Gabi2179g00030 541 SUPERFAMILY Acetyl-CoA synthetase-like 6 537 - -
Gabi2179g00030 541 FunFam Long-chain-fatty-acid--CoA ligase FadD 12 436 - -
Gabi2179g00030 541 ProSitePatterns Putative AMP-binding domain signature. 185 196 IPR020845 -
Gabi2179g00030 541 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 533 - -
Gabi2179g00030 541 Gene3D - 3 435 IPR042099 -
Gabi2179g00030 541 FunFam 4-coumarate--CoA ligase 2 437 538 - -
Gabi2179g00030 541 Pfam AMP-binding enzyme 32 441 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00030 Gabi-Chr2179 319527 329769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00030 8 503 Monolignol Biosynthesis Gene Families AT1G51680 71.485 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00030 K01904 - gmx:100779668 956.051