Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00027 ATGTCACCAACTACAGAAGAATTCATCTTCCGCTCCAAACTCCCCGACATTCCCATTCCCACTCATCTCCCATTATACTCTTACTGCTTCCAAAACTTGTCCCACTACCAACACCGTCCATGCCTCATCGACGGCGACACCGGCGAAACCTTCACCTACGCCGAAGTCGATCTCACCGCTCGCAGGATCGCCTCAGGCCTCCACACCATCGGAATCTGTCAGGGTGATGTCATCATGCTCCTCCTCCGTAACTGTCCCCAGTTCGCCCTCGCTTTTCTGGGAGCCTCACCCCGCGGCGCCACTGTCACCACCGCTAACCCGTTCTACACGCCTGCAGAGCTCGCGAAGCAAGCGGCGGCGACGAACACCAAGCTGATCATAACTCAGGCCGCATACGTCGAGAAAATCAAGGGTTTCGCTGAAAACAACGATGTGATGGTGATGTGCATTGATTCCTCGCCGGAGGATGGTGTTCTGCATTTCTCTGCGCTGACGAACGCTGACGAGAGCGAAGCCCCCGCCGTTAAGATAAGCCCAGACGACGTCGTTGCGATCCCTTTTTCCTCCGGAACTTCTGGGCTTCCCAAGGGAGTGATGTTAACGCACAAAAACTTGGTGACGACGGTGGCGCAGCTGGTTGACGGAGAAAACCCGAACCAGTACACTCACAGCGAGGATGTGCTCCTCTGCGTGCTGCCTATGTTTCATATATATGCGCTTAACTCCATTTTGCTGTGCGGGATTCGCGCTGGTGCAGCGGTGCTGATTGTGCAGAAGTTTGAGATTACTACGTTGTTGGAGCTGATCGAGAAGTACAAGGTGACGGTTGCATCGTTTGTCCCACCTATCGTTTTGGCGTTGGTTAAGAGCGGGGATGCTCAGCGATACGACCTGTCGTCTATTCGGGTCCTGATCACGGGTGCTGCACCCATGGGTGTGGAACTCGAGGAAGCTGTGAAGGCTAGGCTACCTCACGCCAAACTTGGACAGGGGTATGGTATGACAGAGGCAGGACCACTTTCCATTAGCTTGGGATTTGCAAAGGAACCATTCGAAACAAAATCAGGTGCCTGCGGAACTGTTGTAAGAAACACCGAGGTGAAAATTGTAGACACGGAGACAGGTGCTTCTCTTCCAAGAAACAAAGCCGGTGAAATTTGCGTTAGAGGAATAAAGGTTATGAAAGGATACCTAAATGACCCAGAGGCCACAGAGAGAACTATAGATAAAGAAGGATGGCTACATACTGGTGATATTGGTTTCATAGATGATGATGATGAGCTCTTCATTGTTGATCGGTTAAAAGAGCTTATCAAATACAAAGGATTCCAAGTTGCTCCTGCTGAGCTCGAAGCAATGTTGATTGCTCACCCAAGCATTTCTGATGCTGCCGTTGTACCCTTAAAAGATGAAGCTGCCGGAGAACTTCCAGTTGCATTTGTTGTAAGATCAAATGGTTCTAAGATCACCGAAGATGAAATCAAGCAATACATTTCACAACAGGTGGTATTTTACAAGAGAATCAACAAAGTTTTCTTCACCGACACTATTCCTAAAGCAGCCTCAGGCAAGATTATGCGAAAGGAATTAACTGCAAGGCTTAGCCAATGTCTCGTGTCCAATTAG 1626 0.4969 MSPTTEEFIFRSKLPDIPIPTHLPLYSYCFQNLSHYQHRPCLIDGDTGETFTYAEVDLTARRIASGLHTIGICQGDVIMLLLRNCPQFALAFLGASPRGATVTTANPFYTPAELAKQAAATNTKLIITQAAYVEKIKGFAENNDVMVMCIDSSPEDGVLHFSALTNADESEAPAVKISPDDVVAIPFSSGTSGLPKGVMLTHKNLVTTVAQLVDGENPNQYTHSEDVLLCVLPMFHIYALNSILLCGIRAGAAVLIVQKFEITTLLELIEKYKVTVASFVPPIVLALVKSGDAQRYDLSSIRVLITGAAPMGVELEEAVKARLPHAKLGQGYGMTEAGPLSISLGFAKEPFETKSGACGTVVRNTEVKIVDTETGASLPRNKAGEICVRGIKVMKGYLNDPEATERTIDKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPSISDAAVVPLKDEAAGELPVAFVVRSNGSKITEDEIKQYISQQVVFYKRINKVFFTDTIPKAASGKIMRKELTARLSQCLVSN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00027 541 SUPERFAMILY Acetyl-CoA synthetase-like 13 536 - -
Gabi2179g00027 541 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 531 - -
Gabi2179g00027 541 Pfam AMP-binding enzyme 33 440 IPR000873 -
Gabi2179g00027 541 CDD 4CL 19 530 - -
Gabi2179g00027 541 ProSitePatterns Putative AMP-binding domain signature. 185 196 IPR020845 -
Gabi2179g00027 541 Gene3D - 435 538 IPR045851 -
Gabi2179g00027 541 FunFam Long-chain-fatty-acid--CoA ligase FadD 11 435 - -
Gabi2179g00027 541 Pfam AMP-binding enzyme C-terminal domain 449 524 IPR025110 -
Gabi2179g00027 541 Gene3D - 3 434 IPR042099 -
Gabi2179g00027 541 FunFam 4-coumarate--CoA ligase 2 436 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00027 Gabi-Chr2179 288615 297371 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00027 4 502 Monolignol Biosynthesis Gene Families AT1G51680 66.469 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00027 K01904 - gmx:100810418 905.975