Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00026 ATGAAAAGTAAAAAAAATTTGGTTGAAGAATTCATCTTCCGCTCCAAACTCCCCGACATTCCCATTCCCACTCATCTCCCATTATACTCTTACTGCTTCCAAAACTTGTCCCACTACCAACACCGTCCATGCCTCATCGACGGCGACACCGGCGAAACCTTCACCTACGCCGAAGTCGATCTCACCGCTCGCAGGATCGCCTCAGGCCTCCACACCATCGGAATCTGTCAGGGTGATGTCATCATGCTCCTCCTCCGTAACTGTCCCCAGTTCGCCCTCGCTTTTCTGGGAGCCTCACCCCGCGGCGCCACTGTCACCACCGCTAACCCGTTCTACACGCCTGCAGAGCTCGCGAAGCAAGCGGCGGCGACGAACACCAAGCTGATCATAACTCAGGCCGCATACGTCGAGAAAATCAAGGGTTTCGCTGAAAACAACGATGTGATGGTGATGTGCATTGATTCCTCGCCGGAGGATGGTGTTCTGCATTTCTCTGCGCTGACGAACGCTGACGAGAGCGAAGCCCCCGCCGTTAAGATAAGCCCAGACGACGTCGTTGCGATCCCTTTTTCCTCCGGAACTTCTGGGCTTCCCAAGGGAGTGATGTTAACGCACAAAAACTTGGTGACGACGGTGGCGCAGCTGGTTGACGGAGAAAACCCGAACCAGTACACTCACAGCGAGGATGTGCTCCTCTGCGTGCTGCCTATGTTTCATATATATGCGCTTAACTCCATTTTGCTGTGCGGGATTCGCGCTGGTGCAGCGGTGCTGATTGTGCAGAAGTTTGAGATTACTACGTTGTTGGAGCTGATCGAGAAGTACAAGGTGACGGTTGCATCGTTTGTCCCACCTATCGTTTTGGCGTTGGTTAAGAGCGGGGATGCTCAGCGATACGACCTGTCGTCTATTCGGGTCCTGATCACGGGTGCTGCACCCATGGGTGTGGAACTCGAGGAAGCTGTGAAGGCTAGGCTACCTCACGCCAAACTTGGACAGGGGTATGGTATGACAGAGGCAGGACCACTTTCCATTAGCTTGGGATTTGCAAAGGAACCATTCGAAACAAAATCAGGTGCCTGCGGAACTGTTGTAAGAAACACCGAGGTGAAAATTGTAGACACGGAGACAGGTGCTTCTCTTCCAAGAAACAAAGCCGGTGAAATTTGCGTTAGAGGAATAAAGGTTATGAAAGGATACCTAAATGACCCAGAGGCCACAGAGAGAACTATAGATAAAGAAGGATGGCTACATACTGGTGATATTGGTTTCATAGATGATGATGATGAGCTCTTCATTGTTGATCGGTTAAAAGAGCTTATCAAATACAAAGGATTCCAAGTTGCTCCTGCTGAGCTCGAAGCAATGTTGATTGCTCACCCAAGCATTTCTGATGCTGCCGTTGTACCCTTAAAAGATGAAGCTGCCGGAGAACTTCCAGTTGCATTTGTTGTAAGATCAAATGGTTCTAAGATCACCGAAGATGAAATCAAGCAATACATTTCACAACAGGTGGTATTTTACAAGAGAATCAACAAAGTTTTCTTCACCGACACTATTCCTAAAGCAGCCTCAGGCAAGATTATGCGAAAGGAATTAACTGCAAGGCTTAGCCAATGTCTCGTGTCCAATTAG 1635 0.493 MKSKKNLVEEFIFRSKLPDIPIPTHLPLYSYCFQNLSHYQHRPCLIDGDTGETFTYAEVDLTARRIASGLHTIGICQGDVIMLLLRNCPQFALAFLGASPRGATVTTANPFYTPAELAKQAAATNTKLIITQAAYVEKIKGFAENNDVMVMCIDSSPEDGVLHFSALTNADESEAPAVKISPDDVVAIPFSSGTSGLPKGVMLTHKNLVTTVAQLVDGENPNQYTHSEDVLLCVLPMFHIYALNSILLCGIRAGAAVLIVQKFEITTLLELIEKYKVTVASFVPPIVLALVKSGDAQRYDLSSIRVLITGAAPMGVELEEAVKARLPHAKLGQGYGMTEAGPLSISLGFAKEPFETKSGACGTVVRNTEVKIVDTETGASLPRNKAGEICVRGIKVMKGYLNDPEATERTIDKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPSISDAAVVPLKDEAAGELPVAFVVRSNGSKITEDEIKQYISQQVVFYKRINKVFFTDTIPKAASGKIMRKELTARLSQCLVSN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00026 544 Gene3D - 6 437 IPR042099 -
Gabi2179g00026 544 CDD 4CL 22 533 - -
Gabi2179g00026 544 SUPERFAMILY Acetyl-CoA synthetase-like 14 539 - -
Gabi2179g00026 544 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Gabi2179g00026 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 534 - -
Gabi2179g00026 544 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 438 - -
Gabi2179g00026 544 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Gabi2179g00026 544 Pfam AMP-binding enzyme 36 443 IPR000873 -
Gabi2179g00026 544 FunFam 4-coumarate--CoA ligase 2 439 540 - -
Gabi2179g00026 544 Gene3D - 438 541 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00026 Gabi-Chr2179 288615 299644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00026 2 505 Monolignol Biosynthesis Gene Families AT1G51680 66.472 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00026 K01904 - gmx:100810418 905.205