Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2179g00025 ATGAATTTCCATCCTAATACTTCTCTTCACCTAACCCAACCAGATCATGAGAATCAACTCAATCTAGATCTTCACCTTGAGCCATCATCATCTCCTTCATCTTCACCTATTAGTTCCACGGAGCCTCAGCCTCGCATATTCTCATGCAACTATTGCCAGAGAAAGTTTTACAGCTCTCAAGCGCTTGGAGGCCATCAAAATGCTCACAAGCTGGAAAGGACACTGGCCAAGAAGAGCAGGGAGTTGAGTTCAGCCATGCAATCTTATGGAGGACAAGATCAGCGATCAAACTTCAGTGCTTCTCACCATCTTGGTCGTGCTCTTGGGGTCCTTGATGACCAAGGACAAGGTGAGAAGCTTGTTGGACAAAGAGAGTTTAGTTATGGTTCCAAGGAAGGTGTGGCTTCCTGGTCCAGAGGTTATCCTTCTGAAAATGTTCAGGATGATATTAGCCAGCTTGACCTGTCGTTAAGGCTTTGA 480 0.4562 MNFHPNTSLHLTQPDHENQLNLDLHLEPSSSPSSSPISSTEPQPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSAMQSYGGQDQRSNFSASHHLGRALGVLDDQGQGEKLVGQREFSYGSKEGVASWSRGYPSENVQDDISQLDLSLRL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2179g00025 159 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 97 IPR044246 GO:0009788
Gabi2179g00025 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Gabi2179g00025 159 SUPERFAMILY beta-beta-alpha zinc fingers 45 74 IPR036236 -
Gabi2179g00025 159 MobiDBLite consensus disorder prediction 78 100 - -
Gabi2179g00025 159 Coils Coil 68 88 - -
Gabi2179g00025 159 Gene3D Classic Zinc Finger 30 104 - -
Gabi2179g00025 159 MobiDBLite consensus disorder prediction 80 100 - -
Gabi2179g00025 159 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Gabi2179g00025 159 FunFam Zinc finger protein 2 25 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2179g00025 Gabi-Chr2179 269091 269570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2179g00025 1 159 C2H2 Transcription Factor Family AT5G57520 50.898 4.82e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2179g00025 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2179g00025 - - gmx:100778014 234.572