Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2177g00012 ATGGAAATGGATAGCAAAATGGAGATTCCTGTCCCTGGCAATGAGTGCCCTGCTTCTGCTACGATTGAGGTTGAGGATGATGGCAATTCAGTTGGTGTTATGGCTCCAGCTCCATGTAGGTTAGATGCAGGTTTGGGATTTGAAAACGGGGGAGGCTTGGAGATGAATTTGCAGTTGCAAAGAGATATTGAATTCCCCAAAAGGTTCAATCTTTCTCCTTCAATGAAATCCTCATTGAAGAGAAATGTTGCTGTGTTTGCTGCTGGTTTTAAGGAAAAATTCAAAAATTTGCAGACACAGTTTGTTGAGCAGTCTGGAGATTCTCAGAATCTTGATGACAAAGCTGATTTGAGATCAGCGCTGAGTAAATTTAGCAATTTAAATCTTGATGAGGGTATGAAGCTTGTGGAAGATAATGAGAGGGATGATAAGATAATCAAAATAATTCTTCAGATTAAGGATCTTGAGAAATATATCGAAGAGCAAAAAGATTGGGCTCATAAGTCAGTAATAGGAGCAGCAAGAAAGCTAAGCAGTGATCTGACTGAGCTCAAAATGTTAAGGATGGAAAGAGAGGAGACTCTGAAATTGAAGAGAGGGAAACCAACTCTTGATGACTCAACCATGAAGAGACTCTCAGAGATGGAGGATGCCTTAAGAAGGGCTAGTGGTCAAGCAGACCGTGCAAATGCAAACGTGAGAAGAATAGAGTTAGAGAATGCAGAAATCAAAGCAGAGATTGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTGGATGCTTGTAAAGAAGTTGAGAAAAGGGAGAAAAAATTCTTAAAGAAACTTAAAGCATGGGAAAAGCAGAAAGCTAAACTAGAGCAGGAGATTTCTGATGAAAGAGAAAAGGTATTGAAGACACAAGAAGAATTGGCTCAGATTAAGCAGTCTCGAGAAGAAGCTGAGGTCAAGTGGAAGGAAGAGTTGAAGGCCAAAGAGGAAGCCCTAGCACTAGTTGAGGAGGAACGCCAAGCTAAGGAAACTGCTGAGTCTGAAAATAAGAGGAAGCTTGAGGCTTTGCGCGTGAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTATCAAGACTTGAGGAGGAGATTTCGCGCCTTAAAGCATCTGCTCAGTCTGCCGAGTCATCATCGATGACTAACTCTGAGGATGCAATGCCCCAGTGGGAGACAGCAATTGCTAATCTGCTTCAAGACTTAGATGACATGGAGGATCATTCGGAGAAAGAAGTGAAGAGCAACAGAGAATGCATTATGTGCATGAAAGATAGAGTCTCCATTGTTTTCTTGCCGTGTGCTCACCAAGTTATGTGTGCTAGTTGCAGTGCTGAGCATGGAAGAAAGGGTAAGACTTCTTGTCCTTACTGCCGGGTTCAAATCCAACAGAGAATCCGTGTGTTTGGGATAGGCTCGTAG 1446 0.4239 MEMDSKMEIPVPGNECPASATIEVEDDGNSVGVMAPAPCRLDAGLGFENGGGLEMNLQLQRDIEFPKRFNLSPSMKSSLKRNVAVFAAGFKEKFKNLQTQFVEQSGDSQNLDDKADLRSALSKFSNLNLDEGMKLVEDNERDDKIIKIILQIKDLEKYIEEQKDWAHKSVIGAARKLSSDLTELKMLRMEREETLKLKRGKPTLDDSTMKRLSEMEDALRRASGQADRANANVRRIELENAEIKAEIEASKLSASESVDACKEVEKREKKFLKKLKAWEKQKAKLEQEISDEREKVLKTQEELAQIKQSREEAEVKWKEELKAKEEALALVEEERQAKETAESENKRKLEALRVKIEIDFQRHKDDLSRLEEEISRLKASAQSAESSSMTNSEDAMPQWETAIANLLQDLDDMEDHSEKEVKSNRECIMCMKDRVSIVFLPCAHQVMCASCSAEHGRKGKTSCPYCRVQIQQRIRVFGIGS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2177g00012 481 Coils Coil 212 253 - -
Gabi2177g00012 481 ProSiteProfiles Zinc finger RING-type profile. 427 467 IPR001841 -
Gabi2177g00012 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 478 IPR013083 -
Gabi2177g00012 481 Coils Coil 261 351 - -
Gabi2177g00012 481 SUPERFAMILY RING/U-box 426 474 - -
Gabi2177g00012 481 PANTHER OS05G0141500 PROTEIN 64 476 IPR046934 -
Gabi2177g00012 481 Pfam Zinc finger, C3HC4 type (RING finger) 424 472 - -
Gabi2177g00012 481 Coils Coil 353 387 - -
Gabi2177g00012 481 CDD RING-HC_MIP1-like 422 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2177g00012 Gabi-Chr2177 283206 289623 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2177g00012 427 479 C3H Transcription Factor Family AT1G73950 35.849 2.12e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2177g00012 - - gmx:100777787 567.385