Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2177g00011 ATGGGTTGCACGATGAGGGAAAAGCACATCAGAGCTAATCGGAGGTCTCGATCGGCGAAAACGGATTCGGATTCATGCGACGGGGATGCCATATCCAAATCCATAGCCGAGTCTGGTCTCAAGCCCTTTAAATTTCTTAACGATTCTTCTCAGAATCAGAATCCTAACCCGAACCCTAATCTCGAGGAAACTGGATGGGGTTACTGCACCGAAGAGCAATTGGAAGAGATCCTGTTGAAAAACTTGGAATTCATATACAAAGAAGCTGTGTCAAAGCTTGTTGCTTTGGGCTATGATGAGGACGTTGCCGTGAAAGCCATATTGCGAAATGGGCACTGCTATGGTGGCATGGATGTGCTGACAAATATCTTGCACAACTCCTTAGCGTTTTTGAATAGCAATGGTGTTGGTAATAATGGGAATTTGGATGAGTCTGAGCCTGTGTTCTCTGACTTGAGGCAGTTAGAGGAGTACTCTTTGGCGGGTATGGTGTGTTTGTTGCAACAAGTGAGGCCTCATTTGAGTAAAGGTGATGCCATGTGGTGTTTGCTCATGAGTGATCTTCATATGGGAAGGGCTAGCACTATGGAAATTCCGGTGCCCGGCAACGGTTGCCCTGTTCCTGCTGCTGTTGAGGCTGGTGGCAATTCAGTTGGTGTTATGGCTCCAGCTCTGTGTAGGTTTCATGGTGGTTGGGGATATGGAAATGGGGGAGGCTTGGATTCTTCTGTGACTGGGTTCTTCTCTTGTGGTGCAGAGAAGAATTTGCAGTTGCAAAGGGATATTGAATTCCCCAAGAGGTTTAATCTTTCTCCTTCCATGAAGTCCTTATTGAAGAGAAATGTTGCTATGTTTGCTGCTGGTTTTCGGGCAAACTCCCAACAATTGCAGACACAGGTGAAGGCCTTTCCCGGCCGTAGTACCACCGTGTCTAATCTGGATTCTTTGGCTGTATCGGGAACAGAAGTCTTGGTTGAGCAGTCTGGAGATGCTAAGAATCTTGATAGCCAAGATGCTGTCAACTCAGTGCTGAGTAAATTTCGCGATTTAAATCTTGATGAGAATTTGGAGCTTGTGGCAGAGGATCAGAAGGATGAGGTGATAGTCAATTTATTTCATCAGATTAAGGATCTTGAGAAACAGGTCAAGGAGCGAAAAGATTGGGCTCATCAGAAGGCAATGCAAGCAGCAAGAAAGCTAAGCAGTGATCTGACTGAGCTCAAAATGTTACGAATGGAAAGAGAGGAGACTCAAAAATTGAAGAAAGGGAAACAGGCACTTGAGGATACAACCATGAAGAGACTCTCAGAGATGGAGAATGCCTTGAGAAAGGCTAGTGGTCAAGTGGACCGTGCAAATGCAGCTGTGAGAAGACTAGAGACAGAGAATGCAGAAATCAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTAACAGCTTGTTTAGAAGTTGCAAAAAGGGAGAAAAAATGCTTGAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAACTACAGCAGGAGATTTCTGATGAAAAAGAGAAGATATTGGAGACACAAGAAGCATTGGTTCAGATTAGACAGCGTCAAAAAGAAGCTGAGGTCAAATGGAAGGAGGAATTGAAGGCTAAAGAGGAAGCATTAGCACTAGTTGAGGAGGAACGCCGTTCTAAGGAAGCAGCTGAGTCTAATAATAAGAGGAAGCTCGAGGCTTTACGCCTGAAGATAGAGATAGATTTCCAGCGGCACAAGGATGATCTATTAAGAGTTGAGCAGGAGCTTTCGCGCCTTAAAGCATCTGCTCAGTCTGCTGACTTGCATCACCAGTCAAGTACTTCACCTATAACTGAATCTGAAGGTGCATTGCCTCAAAGAGATACAATTGCTAAGCTGCTTCAAGAATTAGATAATTTGGAGGATTTTTCAGAGAAAGAAGTGAATAGCAACAGAGAATGCATTATATGTAAGAAAGATGAAGTCTCCATTGTTTTCTTGCCGTGTTCACACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAGGGTAAGGCTGTTTGTCCTTGCTGCCGGGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCAAGTTCGTAG 2130 0.4432 MGCTMREKHIRANRRSRSAKTDSDSCDGDAISKSIAESGLKPFKFLNDSSQNQNPNPNPNLEETGWGYCTEEQLEEILLKNLEFIYKEAVSKLVALGYDEDVAVKAILRNGHCYGGMDVLTNILHNSLAFLNSNGVGNNGNLDESEPVFSDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHMGRASTMEIPVPGNGCPVPAAVEAGGNSVGVMAPALCRFHGGWGYGNGGGLDSSVTGFFSCGAEKNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSQQLQTQVKAFPGRSTTVSNLDSLAVSGTEVLVEQSGDAKNLDSQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVNLFHQIKDLEKQVKERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISDEKEKILETQEALVQIRQRQKEAEVKWKEELKAKEEALALVEEERRSKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRVEQELSRLKASAQSADLHHQSSTSPITESEGALPQRDTIAKLLQELDNLEDFSEKEVNSNRECIICKKDEVSIVFLPCSHQVMCASCSDEYGRKGKAVCPCCRVQIQQRIRVFGASS 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2177g00011 709 SUPERFAMILY RING/U-box 635 701 - -
Gabi2177g00011 709 MobiDBLite consensus disorder prediction 604 623 - -
Gabi2177g00011 709 Pfam Zinc finger, C3HC4 type (RING finger) 652 700 - -
Gabi2177g00011 709 CDD RING-HC_MIP1-like 650 704 - -
Gabi2177g00011 709 MobiDBLite consensus disorder prediction 46 63 - -
Gabi2177g00011 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 706 IPR013083 -
Gabi2177g00011 709 MobiDBLite consensus disorder prediction 46 65 - -
Gabi2177g00011 709 Pfam Family of unknown function (DUF6592) 81 194 IPR046527 -
Gabi2177g00011 709 ProSiteProfiles Zinc finger RING-type profile. 655 695 IPR001841 -
Gabi2177g00011 709 PANTHER OS05G0141500 PROTEIN 1 704 IPR046934 -
Gabi2177g00011 709 Coils Coil 491 574 - -
Gabi2177g00011 709 Coils Coil 435 476 - -
Gabi2177g00011 709 MobiDBLite consensus disorder prediction 1 30 - -
Gabi2177g00011 709 Coils Coil 583 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2177g00011 Gabi-Chr2177 253065 258495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2177g00011 635 705 C3H Transcription Factor Family AT1G73950 36.000 4.92e-08 53.9