Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2177g00008 ATGCCAGTTCCACTTGCTCCCTACCCGACACCACCAGCTCCATATACACCACCAGCAAATGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTCTATCCAGTTGGAGCAACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAATTTGTGGAGGCTGCCATACTTTACTCATGTACATCCGTGGAGCTACAAGTGTACAATGCTCTTGTTGTCACACTGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTTAACTGTGGGAGCTGCAGGATGCTACTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCTCAGCAAGCACCATTGAGCAGAAGTTCAGCACCTAA 438 0.4817 MPVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGSCRMLLMYQYGARSVKCAVCNFVTSVGASASTIEQKFST 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2177g00008 145 PANTHER PROTEIN LSD1 16 55 IPR040319 -
Gabi2177g00008 145 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
Gabi2177g00008 145 NCBIfam zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Gabi2177g00008 145 NCBIfam zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Gabi2177g00008 145 NCBIfam zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Gabi2177g00008 145 Pfam LSD1 zinc finger 67 91 IPR005735 -
Gabi2177g00008 145 Pfam LSD1 zinc finger 105 129 IPR005735 -
Gabi2177g00008 145 Pfam LSD1 zinc finger 28 52 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2177g00008 Gabi-Chr2177 201403 203763 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Gabi2177g00008 zf-LSD1 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2177g00008 - - qsu:112000975 268.085