Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2177g00003 ATGGATTCTCGGGAACCACCGTCCCGGCCACCACCGCCGCCGACCATGATGGCAGGACCCACCTCGTACGCTTCGACAAACTCCTCCCCGACCTTGATCAGCCCTAATTCCACCATGTTGGCCCCCGCTACGGCCCGATTCCCCTTCGGCTCCGTCGCGCCGCAGCCACCACCGCCTCCTCCGTCGGAGGCCTTCAACACCACCGCCAGCCCCTACGATGGGCCCTCGTCGCCGTTGAAGCCGTGCGGGCTCTCCAAGAAGAAGCGCGGCCGGCCCAGGAAATACTCGCCGGACGGTAACATTGCTCTGGGCTTGGCTCCGACGCACGTGTCATCTTCCGGCGGAGGCGGCGGAGATTCGGGCGGCACGCCGTCTGCGGACGCTCCGGCAAAGAAGCATAGAGGAAGGCCTCCGGGCTCTGGAAAGAAGCAATTGGATGCGCTTGGAATTGGTGGGGTTGGATTCACTCCTCACGTAATCTTGGTGGACCCTGGCGAGGATATTACCGAAAAAATCATGGCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTTTCTGCTAATGGTGCAATCCGCAATGTCACCCTTCGACAGCCAGCATTGTCTGGTGGTACTGCAACATTCGAGGGCCGATTTGAGATTATATCCTTATCAGGTGCTTTGCAGCTATCTGAAAATAATGGTGAACGCAGTAGAACAAGCGGTCTGAGTGTGTCTGTGGCAGGATCTGATGGACGAGTTTTGGGTGGTGGAGTTGCTGGAATGCTAACTGCGGCATCATCTGTACAGGTCATTGTGGGTAGCTTTATTGCAAATGCAAAAAAGTCAAGCTCGAATATGCTGAAATCTGGGCCTTCTTCAGCACCAACATCCCAAATGTTAACCTTCGGTGCACCTATGACTCCAACGAGTCCTACCTCTCAAGGGCATTCTACTGAGTCCTCTGAGGACAATGATCATAGCCCATTTAGTGCGGGTGGACTCTACAATAATGCTAGTCAGCCTGTTCATAATATGCAGATGTACCATCATCCACTATGGGCTGGCCAAACTCGTCAGTGA 1065 0.5493 MDSREPPSRPPPPPTMMAGPTSYASTNSSPTLISPNSTMLAPATARFPFGSVAPQPPPPPPSEAFNTTASPYDGPSSPLKPCGLSKKKRGRPRKYSPDGNIALGLAPTHVSSSGGGGGDSGGTPSADAPAKKHRGRPPGSGKKQLDALGIGGVGFTPHVILVDPGEDITEKIMAFSQQGPRTVCILSANGAIRNVTLRQPALSGGTATFEGRFEIISLSGALQLSENNGERSRTSGLSVSVAGSDGRVLGGGVAGMLTAASSVQVIVGSFIANAKKSSSNMLKSGPSSAPTSQMLTFGAPMTPTSPTSQGHSTESSEDNDHSPFSAGGLYNNASQPVHNMQMYHHPLWAGQTRQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2177g00003 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 55 322 IPR039605 GO:0003680
Gabi2177g00003 354 ProSiteProfiles PPC domain profile profile. 151 291 IPR005175 -
Gabi2177g00003 354 MobiDBLite consensus disorder prediction 1 145 - -
Gabi2177g00003 354 MobiDBLite consensus disorder prediction 51 65 - -
Gabi2177g00003 354 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Gabi2177g00003 354 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Gabi2177g00003 354 MobiDBLite consensus disorder prediction 1 18 - -
Gabi2177g00003 354 Gene3D - 157 283 - -
Gabi2177g00003 354 MobiDBLite consensus disorder prediction 19 41 - -
Gabi2177g00003 354 MobiDBLite consensus disorder prediction 278 333 - -
Gabi2177g00003 354 CDD DUF296 156 270 IPR005175 -
Gabi2177g00003 354 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 270 IPR005175 -
Gabi2177g00003 354 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2177g00003 Gabi-Chr2177 159899 164606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2177g00003 86 332 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 54.475 6.74e-74 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2177g00003 - - gmx:100789717 489.96