Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2177g00002 ATGGCTGGTTTGGATTTAGGAACTGCTTCACGCTTTGTTCAAAACCTTCACAGACCGGACTTGCACCTTCAGCAGCATCACCACCACCACCAACACCATCCCGATTCCGAAGAACAAGAACAGAATCGCGGTGGTGCACCACCGTTTTCCACCACCGAAGACGATGATCCAAGCCAAGGCCTCGAGCTAGTCTCCGCCGGACCCGGAGACATCGTCGGCCGCCGTCCACGTGGCAGGCCACCGGGCTCCAAGAACAAGCCGAAGCCGCCGGTGATCATCACGAGGGAGAGCGCCAACACTCTCAGGGCTCATATTCTCGAAGTTGGAAGCGGCTCCGACGTGTTCGACTGCGTCACCACCTACGCGCGGCGGCGCCAGCGTGGGATCTGTATCCTAAGCGGCAGCGGCACCGTCACCAATGTCAGCCTGCGGCAACCGGCGGCAGCTGGAGCCGTCGTCACCCTCCACGGGAGGTTCGAGATATTATCCCTCTCAGGTTCTTTCCTTCCGCCGCCGGCTCCGCCGGGAGCGACTAGCCTCACTATATACCTCGCCGGAGGGCAGGGACAGGTGGTAGGAGGGAGCGTGGTCGGAGAGTTGACAGCGGCGGGGCCGGTGATCGTGATTGCTGCTTCGTTTACCAACGTGGCTTATGAGAGGTTGCCGTTGGACGATGAGGAACAACAACAGCTTCAGATGCAGCCACCGGCTACCGGTTCTCAAGGTTCCGGTGGTGGCGGTGGCGTGGGAAACAACAACCCTTTCCCTGACCCTTCTTCCGGTCTCCCGTTCTTCAATTTGCCATTGAATATGCAGAATGTTCAGTTACCAGTGGATGGTTGGGCGGGAAACTCAGCTGCACGTCCTTCATTTTAA 876 0.5879 MAGLDLGTASRFVQNLHRPDLHLQQHHHHHQHHPDSEEQEQNRGGAPPFSTTEDDDPSQGLELVSAGPGDIVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGSDVFDCVTTYARRRQRGICILSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDDEEQQQLQMQPPATGSQGSGGGGGVGNNNPFPDPSSGLPFFNLPLNMQNVQLPVDGWAGNSAARPSF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2177g00002 291 Gene3D - 101 236 - -
Gabi2177g00002 291 MobiDBLite consensus disorder prediction 43 58 - -
Gabi2177g00002 291 MobiDBLite consensus disorder prediction 227 261 - -
Gabi2177g00002 291 FunFam AT-hook motif nuclear-localized protein 101 228 - -
Gabi2177g00002 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 233 - -
Gabi2177g00002 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 32 257 IPR014476 GO:0003680
Gabi2177g00002 291 PIRSF ESCAROLA 12 291 IPR014476 GO:0003680
Gabi2177g00002 291 MobiDBLite consensus disorder prediction 23 91 - -
Gabi2177g00002 291 CDD DUF296 102 185 IPR005175 -
Gabi2177g00002 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 215 IPR005175 -
Gabi2177g00002 291 ProSiteProfiles PPC domain profile profile. 98 236 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2177g00002 Gabi-Chr2177 138661 139536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2177g00002 1 291 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 66.346 1.34e-102 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2177g00002 - - pvu:PHAVU_003G230600g 405.216