Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2177g00001 ATGGCTGCAGGGATTGGACTTCTCTCCATGACCCAGATCCCAAATTTGTCACAATCCCAACAACACCATCAAAATCAAAATCAAAATCAACCTCAACCTCAACAAAACCCTAAATCCACCGGTTCATCATCGAATTGGATGTGGAATCCTAGGGATGAACAAAAAGAAGAAGACGAATCATGGGAAGTCAGAGCCTTTGCAGAAGACACTAGAAACATGATGGGAACCACTTGGCCTCCGAGGTCCTACACTTGCACCTTCTGTAGAAGGGAGTTCCGGTCAGCACAAGCTCTCGGTGGCCACATGAACGTGCACCGCCGTGACCGTGCACGCCTCCACCAACCACAGTACCCTGCTGCTTCACCCAACACAACAACAACAACAACAACAACCACTTCCTCTAATTACTCTCACTTCCCACCTCATCAGGAGCTTGTTGCTAATGGTGGATTGTGCCTCTTCTACCATTTGCCAAGCCCTAATACTCATAGTCACAGTGCTACACTGAATGCATGTGGTGAATCACCCTCCACTCTTCTCTCTGTCTCTTCCTACCCACAAAACAACATTATTATGATGATGCCAACTTGTTCACCTTCTTTTGATATGGCTAGAGCAGCTTCTTCAGCTGCAGGGATCAATGGTTTTTCTTCTTACTCTAGCAAAGGGGATGAACCTACGAACTCTTCCACCAACCGTGGCCAACACCATGAGGAACTTGATCTAGAGCTCCGCTTGGGGCATAGATCAACACCAACTTGA 762 0.4724 MAAGIGLLSMTQIPNLSQSQQHHQNQNQNQPQPQQNPKSTGSSSNWMWNPRDEQKEEDESWEVRAFAEDTRNMMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQPQYPAASPNTTTTTTTTTSSNYSHFPPHQELVANGGLCLFYHLPSPNTHSHSATLNACGESPSTLLSVSSYPQNNIIMMMPTCSPSFDMARAASSAAGINGFSSYSSKGDEPTNSSTNRGQHHEELDLELRLGHRSTPT 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2177g00001 253 MobiDBLite consensus disorder prediction 13 49 - -
Gabi2177g00001 253 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Gabi2177g00001 253 MobiDBLite consensus disorder prediction 116 136 - -
Gabi2177g00001 253 PANTHER OS07G0101800 PROTEIN 55 249 - -
Gabi2177g00001 253 MobiDBLite consensus disorder prediction 117 136 - -
Gabi2177g00001 253 MobiDBLite consensus disorder prediction 231 246 - -
Gabi2177g00001 253 Pfam C2H2-type zinc finger 83 107 - -
Gabi2177g00001 253 SUPERFAMILY beta-beta-alpha zinc fingers 80 110 IPR036236 -
Gabi2177g00001 253 MobiDBLite consensus disorder prediction 218 253 - -
Gabi2177g00001 253 SMART c2h2final6 83 105 IPR013087 -
Gabi2177g00001 253 MobiDBLite consensus disorder prediction 13 60 - -
Gabi2177g00001 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Gabi2177g00001 253 Gene3D Classic Zinc Finger 72 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2177g00001 Gabi-Chr2177 59643 60404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2177g00001 46 248 C2H2 Transcription Factor Family AT4G17810 39.286 1.22e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2177g00001 zf-C2H2_6 5.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2177g00001 - - gmx:100818142 248.44