Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2175g00031 ATGGAAGATATTTACAAGTTGAACTCTCTTCTATCTTCTCCTGATGATGTTGTTAACGTTTCTGCTACTACTCCTGTGGCTAATAACTACCTTCAGCTGAAAGAGCCCGAACCGAATGTAACCGGGTCAGATATGTCGGATCGGCTTATCAAGACCCAGATCGCCACTCATCCACTTTATCCAAATCTACTATCTGCTTACATAGAATGCCACAAGGTTGGAGCACCACCAGAACTGGCGTCTTTTCTTGAAGAAATAGGCTGTGAAACCCACCCCACGGATGCTCTTCGTGATTTAGGAGATGATCCTGAGCTTGACGAGTTCATGGAATCATACTGCCAAGTTCTTCATAGATACAAAGAGGAGTTGTCCAAGCCCTTCAACGAAGCAACCTTGTTTTTGTGCAATATCGAAACACAACTCAACAACCTTTGTAGCGGAACACTAAGAGTGTCATCGGATGAGGCAGCTGGGACTTCAGAGGATGAATTAAATTGTGAGAAGGTGGAAGCAGTTGAAGGTTATGAATCTTCTGGCACGCGTCCATGTGATCAAGAGCTTAAAGAAATGCTCCTTCGTAAGTATAGTGGTTATCTTAGCAGCTTGAGAAAGGAGTTTCTAAAGAAAAGGAAAAAGGGTAAGCTCCCAAAGGATGCAAGGATGGCACTTATGGACTGGTGGAACACCCACTATAGGTGGCCTTACCCTACGGAAGAGGAGAAATTCAAACTATCAGAAATGACTGGACTTGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGGAAACGGCATTGGAAACCGTTTGAAGATAAACGATTTGCCATTGTGGAGGGTTTAAGTGGCGGCAGCGACATAGGAGGACCTATGTATTAA 879 0.4357 MEDIYKLNSLLSSPDDVVNVSATTPVANNYLQLKEPEPNVTGSDMSDRLIKTQIATHPLYPNLLSAYIECHKVGAPPELASFLEEIGCETHPTDALRDLGDDPELDEFMESYCQVLHRYKEELSKPFNEATLFLCNIETQLNNLCSGTLRVSSDEAAGTSEDELNCEKVEAVEGYESSGTRPCDQELKEMLLRKYSGYLSSLRKEFLKKRKKGKLPKDARMALMDWWNTHYRWPYPTEEEKFKLSEMTGLDQKQINNWFINQRKRHWKPFEDKRFAIVEGLSGGSDIGGPMY 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2175g00031 292 SUPERFAMILY Homeodomain-like 208 274 IPR009057 -
Gabi2175g00031 292 Pfam KNOX1 domain 50 90 IPR005540 GO:0003677|GO:0005634
Gabi2175g00031 292 SMART KNOX1_2 48 92 IPR005540 GO:0003677|GO:0005634
Gabi2175g00031 292 SMART HOX_1 208 273 IPR001356 GO:0003677
Gabi2175g00031 292 CDD homeodomain 218 269 IPR001356 GO:0003677
Gabi2175g00031 292 ProSiteProfiles 'Homeobox' domain profile. 206 269 IPR001356 GO:0003677
Gabi2175g00031 292 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 272 - -
Gabi2175g00031 292 Pfam KNOX2 domain 99 145 IPR005541 GO:0003677|GO:0005634
Gabi2175g00031 292 Pfam Homeobox KN domain 226 265 IPR008422 GO:0003677|GO:0006355
Gabi2175g00031 292 ProSitePatterns 'Homeobox' domain signature. 244 267 IPR017970 GO:0000981|GO:0006355
Gabi2175g00031 292 Gene3D - 204 276 - -
Gabi2175g00031 292 SMART ELK_2 186 207 IPR005539 GO:0003677
Gabi2175g00031 292 ProSiteProfiles ELK domain profile. 186 206 IPR005539 GO:0003677
Gabi2175g00031 292 SMART KNOX2_2 95 146 IPR005541 GO:0003677|GO:0005634
Gabi2175g00031 292 Pfam ELK domain 186 207 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2175g00031 Gabi-Chr2175 239099 243194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2175g00031 1 283 Homeobox Transcription Factor Family AT1G23380 48.814 7.91e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi2175g00031 KNOX2 4.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2175g00031 - - gmx:102660463 434.876