Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2175g00029 ATGTTGGGTTCATCTTCTCGGAATACTGGATCAGTGGGTGTGGAGAAGGCTTCAAGAGCAGATACTATTTCTTTTGATCAGGCAAGAAGTTCTTCAGGACAGTATGATTTCTCAAGAAATAATGATCCATTTGGTCGTGTGCATAGTAGTTTTGTTCCCGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAGCAGAAGAAGTTTAAGGAAGCTATCAACTGCTATTCAAGGAGCATTGCCTTGTCACCAACAGCGGTAGCATATGCAAATAGGGCAATGGCCTATATCAAGCTCAGAAGATTCCAAGAGGCAGAGGATGACTGTACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCCATGGAGGATGCTGAGTTTGCCTTGAGGTTGGAACCTAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGACTTTGTTTGAGAAAGCTATTCTTCAGAAAGCATCTGGAGCTCTTAGAGGCACTGTACAGGGAACTCAAAAAGTGGGAGAGTCAGAGACAAAAGTTAATGAAGGTAGCATCCACCCTGTTTCACATGATGCTCAAAAGTCAGGGCCTGCTGAAGGTCATCAAACAAAGTGTAATGAGTGGCAAATTCCTTCTAAAGAATCACTCTTAATGGAGGAGGTTGATAGCAGGGATACAAAAGCCGGAAGCAGGACTCAAGGACAAGAAGGGGATGGTTCTAGTGCAAGCAATAGTATGGAGCAGGTTAAGAGAAATCACATAATTAGTAAGCAGGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCGGCTTCTCGAGCCATGATTGAAGCTGCAAAGAACATAACACCACCAACCACAGCTTATCAATTTGAGGTCTCTTGGAGAGGGTTTTCAGGTGATCGTGCTTTGCAGGCTTGTCTAATAAAGGCCATACCTCCCCATGAATTGCCGAAGATATTCAAAAATGCCTTATCTTCTACCTTGCTAATTGACATCATAAAGTGTGTTGCATCCTTTTTCGCTGAAGAAAAGGATCTGGTTGTCAGTTATATGGAACATTTGACCAAGGTACCGAGATTTGACATGATTGTAATGTGCCTTCCATCAACAGATAAGGATGTTGGTTACATTTTCGTGCAGACTTACGCAAGATCTGGGATGAAGTATTCTGTAGTGAGGCAACTCCAATGGAGTATGCAGAGATTCTGGACAACCTCAGATCAAAATTCTGCGTTGGACAGTGACATCATCAGTTGTATGTGTTAG 1338 0.4208 MLGSSSRNTGSVGVEKASRADTISFDQARSSSGQYDFSRNNDPFGRVHSSFVPEDVPDAASEKDLGNEFFKQKKFKEAINCYSRSIALSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKTLFEKAILQKASGALRGTVQGTQKVGESETKVNEGSIHPVSHDAQKSGPAEGHQTKCNEWQIPSKESLLMEEVDSRDTKAGSRTQGQEGDGSSASNSMEQVKRNHIISKQEMKASVQQLASRAASRAMIEAAKNITPPTTAYQFEVSWRGFSGDRALQACLIKAIPPHELPKIFKNALSSTLLIDIIKCVASFFAEEKDLVVSYMEHLTKVPRFDMIVMCLPSTDKDVGYIFVQTYARSGMKYSVVRQLQWSMQRFWTTSDQNSALDSDIISCMC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2175g00029 445 PANTHER OS05G0129900 PROTEIN 19 397 - -
Gabi2175g00029 445 MobiDBLite consensus disorder prediction 254 270 - -
Gabi2175g00029 445 MobiDBLite consensus disorder prediction 189 270 - -
Gabi2175g00029 445 SMART tpr_5 59 92 IPR019734 GO:0005515
Gabi2175g00029 445 SMART tpr_5 126 159 IPR019734 GO:0005515
Gabi2175g00029 445 SMART tpr_5 93 125 IPR019734 GO:0005515
Gabi2175g00029 445 SUPERFAMILY TPR-like 57 173 IPR011990 GO:0005515
Gabi2175g00029 445 ProSiteProfiles TPR repeat profile. 126 159 IPR019734 GO:0005515
Gabi2175g00029 445 Gene3D Tetratricopeptide repeat domain 51 157 IPR011990 GO:0005515
Gabi2175g00029 445 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Gabi2175g00029 445 MobiDBLite consensus disorder prediction 239 253 - -
Gabi2175g00029 445 Pfam Potential Monad-binding region of RPAP3 307 396 IPR025986 -
Gabi2175g00029 445 Pfam Tetratricopeptide repeat 92 122 IPR001440 GO:0005515
Gabi2175g00029 445 Pfam Tetratricopeptide repeat 63 91 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2175g00029 Gabi-Chr2175 201571 209738 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2175g00029 63 129 U-box Gene Family AT3G07370 39.706 4.75e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2175g00029 K23002 - gmx:100784528 606.29