Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2175g00028 ATGGATTTCCAGGGATTCTTAAACGACTTGCAGGATTGGGAACTTTCTCGAAAGGACAAAGCACGAAAAATGAAGTCACGAAAGGAAAATGGTTCATCTTCTCGGAATACTGGATCAGTGGGTGTGGAGAAGGCTTCAAGAGCAGATACTATTTCTTTTGATCAGGCAAGAAGTTCTTCAGGACAGTATGATTTCTCAAGAAATAATGATCCATTTGGTCGTGTGCATAGTAGTTTTGTTCCCGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAGCAGAAGAAGTTTAAGGAAGCTATCAACTGCTATTCAAGGAGCATTGCCTTGTCACCAACAGCGGTAGCATATGCAAATAGGGCAATGGCCTATATCAAGCTCAGAAGATTCCAAGAGGCAGAGGATGACTGTACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCCATGGAGGATGCTGAGTTTGCCTTGAGGTTGGAACCTAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGACTTTGTTTGAGAAAGCTATTCTTCAGAAAGCATCTGGAGCTCTTAGAGGCACTGTACAGGGAACTCAAAAAGTGGGAGAGTCAGAGACAAAAGTTAATGAAGGTAGCATCCACCCTGTTTCACATGATGCTCAAAAGTCAGGGCCTGCTGAAGGTCATCAAACAAAGTGTAATGAGTGGCAAATTCCTTCTAAAGAATCACTCTTAATGGAGGAGGTTGATAGCAGGGATACAAAAGCCGGAAGCAGGACTCAAGGACAAGAAGGGGATGGTTCTAGTGCAAGCAATAGTATGGAGCAGAGAAATCACATAATTAGTAAGCAGGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCGGCTTCTCGAGCCATGATTGAAGCTGCAAAGAACATAACACCACCAACCACAGCTTATCAATTTGAGGTCTCTTGGAGAGGGTTTTCAGGTGATCGTGCTTTGCAGGCTTGTCTAATAAAGGCCATACCTCCCCATGAATTGCCGAAGATATTCAAAAATGCCTTATCTTCTACCTTGCTAATTGACATCATAAAGTGTGTTGCATCCTTTTTCGCTGAAGAAAAGGATCTGGTTGTCAGTTATATGGAACATTTGACCAAGGTACCGAGATTTGACATGATTGTAATGTGCCTTCCATCAACAGATAAGGATGACTTACGCAAGATCTGGGATGAAGTATTCTGTAGTGAGGCAACTCCAATGGAGTATGCAGAGATTCTGGACAACCTCAGATCAAAATTCTGCGTTGGACAGTGA 1374 0.4214 MDFQGFLNDLQDWELSRKDKARKMKSRKENGSSSRNTGSVGVEKASRADTISFDQARSSSGQYDFSRNNDPFGRVHSSFVPEDVPDAASEKDLGNEFFKQKKFKEAINCYSRSIALSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKTLFEKAILQKASGALRGTVQGTQKVGESETKVNEGSIHPVSHDAQKSGPAEGHQTKCNEWQIPSKESLLMEEVDSRDTKAGSRTQGQEGDGSSASNSMEQRNHIISKQEMKASVQQLASRAASRAMIEAAKNITPPTTAYQFEVSWRGFSGDRALQACLIKAIPPHELPKIFKNALSSTLLIDIIKCVASFFAEEKDLVVSYMEHLTKVPRFDMIVMCLPSTDKDDLRKIWDEVFCSEATPMEYAEILDNLRSKFCVGQ 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2175g00028 457 Pfam Potential Monad-binding region of RPAP3 333 422 IPR025986 -
Gabi2175g00028 457 ProSiteProfiles TPR repeat profile. 87 120 IPR019734 GO:0005515
Gabi2175g00028 457 Pfam Tetratricopeptide repeat 120 150 IPR001440 GO:0005515
Gabi2175g00028 457 Pfam Tetratricopeptide repeat 91 119 IPR001440 GO:0005515
Gabi2175g00028 457 Gene3D Tetratricopeptide repeat domain 79 185 IPR011990 GO:0005515
Gabi2175g00028 457 MobiDBLite consensus disorder prediction 217 297 - -
Gabi2175g00028 457 SMART tpr_5 121 153 IPR019734 GO:0005515
Gabi2175g00028 457 SMART tpr_5 87 120 IPR019734 GO:0005515
Gabi2175g00028 457 SMART tpr_5 154 187 IPR019734 GO:0005515
Gabi2175g00028 457 MobiDBLite consensus disorder prediction 51 68 - -
Gabi2175g00028 457 MobiDBLite consensus disorder prediction 282 297 - -
Gabi2175g00028 457 MobiDBLite consensus disorder prediction 18 68 - -
Gabi2175g00028 457 SUPERFAMILY TPR-like 85 201 IPR011990 GO:0005515
Gabi2175g00028 457 PANTHER OS05G0129900 PROTEIN 1 456 - -
Gabi2175g00028 457 ProSiteProfiles TPR repeat profile. 154 187 IPR019734 GO:0005515
Gabi2175g00028 457 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2175g00028 Gabi-Chr2175 201561 209727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2175g00028 91 157 U-box Gene Family AT3G07370 39.706 6.11e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2175g00028 K23002 - gmx:100784528 708.753