Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2175g00026 ATGGATTTCCAGGGATTCTTAAACGACTTGCAGGATTGGGAACTTTCTCGAAAGGACAAAGCACGAAAAATGAAGTCACGAAAGGAAAATGGTTCATCTTCTCGGAATACTGGATCAGTGGGTGTGGAGAAGGCTTCAAGAGCAGATACTATTTCTTTTGATCAGGCAAGAAGTTCTTCAGGACAGTATGATTTCTCAAGAAATAATGATCCATTTGGTCGTGTGCATAGTAGTTTTGTTCCCGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAGCAGAAGAAGTTTAAGGAAGCTATCAACTGCTATTCAAGGAGCATTGCCTTGTCACCAACAGCGGTAGCATATGCAAATAGGGCAATGGCCTATATCAAGCTCAGAAGATTCCAAGAGGCAGAGGATGACTGTACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCCATGGAGGATGCTGAGTTTGCCTTGAGGTTGGAACCTAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGACTTTGTTTGAGAAAGCTATTCTTCAGAAAGCATCTGGAGCTCTTAGAGGCACTGTACAGGGAACTCAAAAAGTGGGAGAGTCAGAGACAAAAGTTAATGAAGGTAGCATCCACCCTGTTTCACATGATGCTCAAAAGTCAGGGCCTGCTGAAGGTCATCAAACAAAGTGTAATGAGTGGCAAATTCCTTCTAAAGAATCACTCTTAATGGAGGAGGTTGATAGCAGGGATACAAAAGCCGGAAGCAGGACTCAAGGACAAGAAGGGGATGGTTCTAGTGCAAGCAATAGTATGGAGCAGAGAAATCACATAATTAGTAAGCAGGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCGGCTTCTCGAGCCATGATTGAAGCTGCAAAGAACATAACACCACCAACCACAGCTTATCAATTTGAGGTCTCTTGGAGAGGGTTTTCAGGTGATCGTGCTTTGCAGGCTTGTCTAATAAAGGCCATACCTCCCCATGAATTGCCGAAGATATTCAAAAATGCCTTATCTTCTACCTTGCTAATTGACATCATAAAGTGTGTTGCATCCTTTTTCGCTGAAGAAAAGGATCTGGTTGTCAGTTATATGGAACATTTGACCAAGGTACCGAGATTTGACATGATTGTAATGTGCCTTCCATCAACAGATAAGGATGTTGGTTACATTTTCGTGCAGACTTACGCAAGATCTGGGATGAAGTATTCTGTAGTGAGGCAACTCCAATGGAGTATGCAGAGATTCTGGACAACCTCAGATCAAAATTCTGCGTTGGACAGTGACATCATCAGTTGTATGTGTTAG 1416 0.4202 MDFQGFLNDLQDWELSRKDKARKMKSRKENGSSSRNTGSVGVEKASRADTISFDQARSSSGQYDFSRNNDPFGRVHSSFVPEDVPDAASEKDLGNEFFKQKKFKEAINCYSRSIALSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKTLFEKAILQKASGALRGTVQGTQKVGESETKVNEGSIHPVSHDAQKSGPAEGHQTKCNEWQIPSKESLLMEEVDSRDTKAGSRTQGQEGDGSSASNSMEQRNHIISKQEMKASVQQLASRAASRAMIEAAKNITPPTTAYQFEVSWRGFSGDRALQACLIKAIPPHELPKIFKNALSSTLLIDIIKCVASFFAEEKDLVVSYMEHLTKVPRFDMIVMCLPSTDKDVGYIFVQTYARSGMKYSVVRQLQWSMQRFWTTSDQNSALDSDIISCMC 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2175g00026 471 Pfam Potential Monad-binding region of RPAP3 333 422 IPR025986 -
Gabi2175g00026 471 SUPERFAMILY TPR-like 85 201 IPR011990 GO:0005515
Gabi2175g00026 471 Pfam Tetratricopeptide repeat 120 150 IPR001440 GO:0005515
Gabi2175g00026 471 Pfam Tetratricopeptide repeat 91 119 IPR001440 GO:0005515
Gabi2175g00026 471 ProSiteProfiles TPR repeat profile. 87 120 IPR019734 GO:0005515
Gabi2175g00026 471 PANTHER OS05G0129900 PROTEIN 1 423 - -
Gabi2175g00026 471 MobiDBLite consensus disorder prediction 217 297 - -
Gabi2175g00026 471 SMART tpr_5 121 153 IPR019734 GO:0005515
Gabi2175g00026 471 SMART tpr_5 87 120 IPR019734 GO:0005515
Gabi2175g00026 471 SMART tpr_5 154 187 IPR019734 GO:0005515
Gabi2175g00026 471 MobiDBLite consensus disorder prediction 51 68 - -
Gabi2175g00026 471 Gene3D Tetratricopeptide repeat domain 79 185 IPR011990 GO:0005515
Gabi2175g00026 471 MobiDBLite consensus disorder prediction 282 297 - -
Gabi2175g00026 471 MobiDBLite consensus disorder prediction 18 68 - -
Gabi2175g00026 471 ProSiteProfiles TPR repeat profile. 154 187 IPR019734 GO:0005515
Gabi2175g00026 471 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2175g00026 Gabi-Chr2175 201561 209734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2175g00026 91 157 U-box Gene Family AT3G07370 39.706 5.95e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2175g00026 K23002 - gmx:100784528 649.818