Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2175g00019 ATGCAAGGCAAGGAGCAGAAGATTGATCCATCTCCATCAGAGACCCAAGTCAAGGGCTTTCAAAGCTTTGTCAGAACCAATGTAAGTGCTGGTGGGTCCCATGGAAAACAATGTTATTCGGATGACTCAGAAAGCTTCTACATCAAACTCACTGAGTTGTTAGACTCCTCTGGACTGACTCTAATTTTCAATGCCCGAGAAACATTGTTGGACTTGTACCTGTTTTACTTGGAGGTGACCAGAAGAGGAGGATATCACCAGGTTGGTCGAGAAAAGAAATGGGGTGAAGTTGTCTCTGCCTTAAAATTGGAAGGCAGTAATGTGAAGTTATCTGCTCAAGTTGAAAAGCTCTATGCACATCTTCTTTACCAATTCGAGCAATTGTACTTCTATAGGAGTCCTGCAAATCAAGCTGGAGGTTAA 423 0.4279 MQGKEQKIDPSPSETQVKGFQSFVRTNVSAGGSHGKQCYSDDSESFYIKLTELLDSSGLTLIFNARETLLDLYLFYLEVTRRGGYHQVGREKKWGEVVSALKLEGSNVKLSAQVEKLYAHLLYQFEQLYFYRSPANQAGG 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2175g00019 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 41 136 - -
Gabi2175g00019 140 SMART ARID_2 37 126 - -
Gabi2175g00019 140 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
Gabi2175g00019 140 SUPERFAMILY ARID-like 42 132 IPR036431 GO:0003677
Gabi2175g00019 140 SMART bright_3 41 131 IPR001606 GO:0003677
Gabi2175g00019 140 ProSiteProfiles ARID domain profile. 40 130 IPR001606 GO:0003677
Gabi2175g00019 140 Gene3D - 30 139 IPR036431 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2175g00019 8 136 ARID Transcription Factor Family AT3G13350 29.323 7.01e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gabi2175g00019 ARID 1.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2175g00019 - - gmx:102669821 194.126