Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2175g00013 ATGTCCGACAACAAAAACAAAGACCAATACGGTGTCCTTCTCTATTACAAGTACGTCGAGATTCCAAACCTCAACGAGCTCGTCACATTCTACGACTCCAACTGCTCCTCGCTCGGCCTCCTCGGTCGTGTTCGGCTTTCTTCCCACGGCGTCAATGTCACCGTTGGCGGCAACTTATCCTCTTTGGAGAGGCACATCGAAGCCGTTAAGGCCATTAATAGCGTCTTTGAAGGGACTGATTTCAAGCTAGCAACTTGTCATCAGCCATTAATTGACAATGTTGCTAAGGAGTGTGGATTCACTTCTCTCTCAATTCGGATCGTCAAGGAATTGGTTACTCTCAGTTCCCATCCACTGTTAAAGTCACCTGAAATCTCAAATGCTGGAAGACATCTCTCTGCTGTTGAGTTCCATTCTTCCCTTCAGAATTCTAACAAGGAGAGTCCAGAAAACAACCTTGTTTTACTTGATGCAAGGAATCTTTATGAAACAAGAATTGGGAAATTTCATGCACCAAATGTTGAAACTTTAGATCCTCAAGTTAGGCAGTATAGTGATTTGTCCTCTTGGATAGATGATAATGGTGAGCAGTTGAAAGGCAAACAAATCCTCATGTATTGTACCGGTGGAATCAGGTGTGAAATGGCATCAGCATATATTAGGTCAAAAGGTGCTGGGTTTGATAATGTGTTTCAGTTATTTGGTGGCATACAACGGTATTTGGAGCAATTCCCAGACGGTGGTTTCTTCAAAGGAAAGAATTTTGTTTTTGATCCCCGGATATCAGTTGGAAGTTCAGATGCTAATATTGTTGGTACCTGCCTTATCTGTCACTGTTCATTTGATGATTATTCTTCACGCTGCCGATGTACTTATTGCAGAATACTTGTCTTGGTTTGTGGTAATTGCCAGAATGAAGCTGCAGAGTATATTTGTGAGCTATGCCAAAAACAGGGCAAGGCTGTTAGGTCAATGCAGTTGATTGAAAATGGTAAATCAAGGACACCATTGCCAGTTGTTGAGTTCCAGAATTTTTCTTCAGATACTATATTCTTGCCTCAAATGCCTAGGGGAGATGATCTACAGACCTCAAGAAAACTAAGAATCTTATGCTTGCATGGATTTCGGCAGAATGCATCCAGTTTTAAGGGAAGAACAGCATCATTAGCCAAAAAGCTCAAGAAGATTACTGAATTTTCTTTTGTAGATGCACCTCATGAATTGCCATTCATTTATCAAACCCCCATGTCGGTGCCCTGTGGGAATTGTGCATCATCATCATTGCCATCAATTCCTCCTCCACCTCTGGAGAATTGCAAGAAGAAGTTTGCATGGTTTGTGGCATCTAATTTTGATGGAAGTAGCGGTGTTGATTGGAAGGTAGCAGATGGCCCATTTGATCCACTTCAATACCAGCAGCAAACTGATGGATGTGATATTTCACTATCACACTTGAAGAATGTGTTTTCCCAAGAAGGGCCATTTGATGGAATCTTAGGATTTTCACAGGGAGCAGCAATGGCCGCCTTAATCTCTGCACAACAAGAAAAGCTAGAAGGTACTATGGACTTCAAATTTGTAATCTTGTGCTCAGGCTTTGCTCTCCATGTGAAGGGGATGGATGGTGGCCCTATCAAGTGCCCCTCTCTTCATATTTTCGGTAATGAACATGGTAAAGACAGGCAGATAGCTAACCAAGCTAGCAAGGAGCTTGCTTCTCTATATGATGGCGGTTGTTCTGTGATCGTTGAACATGATTGTGGTCACATAATTCCTACTCGGTCCCCATATATTGATGAGATCAAGAATTTCCTTGGGCGTTTTCTGTAA 1830 0.4224 MSDNKNKDQYGVLLYYKYVEIPNLNELVTFYDSNCSSLGLLGRVRLSSHGVNVTVGGNLSSLERHIEAVKAINSVFEGTDFKLATCHQPLIDNVAKECGFTSLSIRIVKELVTLSSHPLLKSPEISNAGRHLSAVEFHSSLQNSNKESPENNLVLLDARNLYETRIGKFHAPNVETLDPQVRQYSDLSSWIDDNGEQLKGKQILMYCTGGIRCEMASAYIRSKGAGFDNVFQLFGGIQRYLEQFPDGGFFKGKNFVFDPRISVGSSDANIVGTCLICHCSFDDYSSRCRCTYCRILVLVCGNCQNEAAEYICELCQKQGKAVRSMQLIENGKSRTPLPVVEFQNFSSDTIFLPQMPRGDDLQTSRKLRILCLHGFRQNASSFKGRTASLAKKLKKITEFSFVDAPHELPFIYQTPMSVPCGNCASSSLPSIPPPPLENCKKKFAWFVASNFDGSSGVDWKVADGPFDPLQYQQQTDGCDISLSHLKNVFSQEGPFDGILGFSQGAAMAALISAQQEKLEGTMDFKFVILCSGFALHVKGMDGGPIKCPSLHIFGNEHGKDRQIANQASKELASLYDGGCSVIVEHDCGHIIPTRSPYIDEIKNFLGRFL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2175g00013 609 SMART rhod_4 139 246 IPR001763 -
Gabi2175g00013 609 FunFam esterase OVCA2 isoform X6 363 609 - -
Gabi2175g00013 609 Gene3D alpha/beta hydrolase 363 609 IPR029058 -
Gabi2175g00013 609 Pfam UPF0176 acylphosphatase like domain 11 110 IPR040503 -
Gabi2175g00013 609 FunFam Rhodanese-like domain-containing protein 6 1 112 - -
Gabi2175g00013 609 ProSiteProfiles Rhodanese domain profile. 149 249 IPR001763 -
Gabi2175g00013 609 Pfam Rhodanase C-terminal 251 316 IPR022111 -
Gabi2175g00013 609 SUPERFAMILY alpha/beta-Hydrolases 440 609 IPR029058 -
Gabi2175g00013 609 Pfam Serine hydrolase (FSH1) 365 600 IPR005645 -
Gabi2175g00013 609 Gene3D - 121 276 IPR036873 -
Gabi2175g00013 609 Gene3D - 1 112 - -
Gabi2175g00013 609 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 4 608 IPR020936 -
Gabi2175g00013 609 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 117 263 IPR036873 -
Gabi2175g00013 609 FunFam Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 119 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2175g00013 Gabi-Chr2175 90725 96100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2175g00013 5 609 Sulfurtransferasese or Rhodanese AT1G09280 63.547 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2175g00013 - - mtr:25484701 1053.12