Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2175g00010 ATGCGATCACATAGTAAAACCCTAAACCAGCAAGTGAAAGAGATGGCGCCCAAACCCAAAGCCTCGAAATCCTCCTCCTCCTCCTCTGTCTCAGCCCCTTTCAAACGTGGCTCTGTGGTGGAGGTCAGCTCCGACGATGAGGGCTTCCGCGGTTCTTGGTTTTCCGGCACCGTCGTCCGCCGCATCGCCTCCGACAAGTTCATGGTGGAGTACGACAACCTGATGGCCGACGAACAAAGTTCCAAGCGGTTGAAAGAAGTCATAAGTCTTCACCAGCTCCGACCATTACCACCGGCGGAGAGCCACCCGGAATTCAAGTTCGGCGATGAGGTGGACGCATTCCACAACGACGGCTGGTGGGAGGGCCACATAACGAAAGATTTCGGGGATGGTAATTTTGCTGTGTATTTCAGGGTCTCGAGGGAGCAAATCGTGTTTCCCAAGGAGAGTCTTAGGATCCACCGCGAGTGGATCAATGAAAATTGGGTTCCGCCAATTGAACAACAACAAGAACAACAACAACAGGATAATGGAGTGCAGAAAGAGGAGTTGACGCAAAATTTGAATTTGGTTGAAACTGTGACGGAGGAGGAAGAGTTTTTGGTTGAAACTGTGACGGAGGAGGAAGAGTTTAAGGTAGGGACAGTAGTGGAGGTTAGTAGTGACGAAGATGGTTTCCAAGGAGCTTGGTTTTCTGCCACTGTAGTTGAGGCAATGGGAAAGGAGAAGTTCTTTATTGAGTACCAGAGCCTACTGGCTGATGATGATTCACAGCTTTTGAGAGAGGAGGCTGATATCCATCACATAAGGCCTCATCCGCCGGAAACTAGTGTTAGTGGTCAATTTAAACTTCTTGATGAAGTTGATGCGTGGTACAATGATGGTTGGTGGGTTGGTGTGGTTTCTAAAGTTCTTGATGACTCAAGATATATAGTTTTCTTCAGGAACACCAATGAAGAACTAGAGTTTCAGGGCTCTCAGTTAAGGCTACACCAGGATTGGATTGATGGAAAATGGATCATGGCTTCTAAGGCATTGAAGTTGTGA 1047 0.4804 MRSHSKTLNQQVKEMAPKPKASKSSSSSSVSAPFKRGSVVEVSSDDEGFRGSWFSGTVVRRIASDKFMVEYDNLMADEQSSKRLKEVISLHQLRPLPPAESHPEFKFGDEVDAFHNDGWWEGHITKDFGDGNFAVYFRVSREQIVFPKESLRIHREWINENWVPPIEQQQEQQQQDNGVQKEELTQNLNLVETVTEEEEFLVETVTEEEEFKVGTVVEVSSDEDGFQGAWFSATVVEAMGKEKFFIEYQSLLADDDSQLLREEADIHHIRPHPPETSVSGQFKLLDEVDAWYNDGWWVGVVSKVLDDSRYIVFFRNTNEELEFQGSQLRLHQDWIDGKWIMASKALKL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2175g00010 348 CDD Tudor_Agenet_AtDUF_rpt2_4 284 330 - -
Gabi2175g00010 348 MobiDBLite consensus disorder prediction 1 37 - -
Gabi2175g00010 348 Pfam Agenet domain 37 98 IPR008395 -
Gabi2175g00010 348 Pfam Agenet domain 214 274 IPR008395 -
Gabi2175g00010 348 CDD Tudor_Agenet_AtDUF_rpt2_4 108 153 - -
Gabi2175g00010 348 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 207 344 - -
Gabi2175g00010 348 CDD Tudor_Agenet_AtDUF_rpt1_3 34 98 - -
Gabi2175g00010 348 CDD Tudor_Agenet_AtDUF_rpt1_3 211 274 - -
Gabi2175g00010 348 SMART agenet_At_2 32 101 IPR014002 -
Gabi2175g00010 348 SMART agenet_At_2 103 159 IPR014002 -
Gabi2175g00010 348 SMART agenet_At_2 209 277 IPR014002 -
Gabi2175g00010 348 SMART agenet_At_2 280 336 IPR014002 -
Gabi2175g00010 348 Gene3D - 23 101 - -
Gabi2175g00010 348 Gene3D - 201 282 - -
Gabi2175g00010 348 MobiDBLite consensus disorder prediction 20 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2175g00010 Gabi-Chr2175 50102 59302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2175g00010 221 334 PHD Transcription Factor Family AT5G58610 30.882 7.09e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2175g00010 - - aprc:113871596 444.506