Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2174g00001 ATGAAGAGAATGGGTTTGACAAGGAAGAGTGGTTTCGTCCTGTGCTTGTTTGGAATAGAGCTGTGCTTCTTGCTTGCCTTTTGTTCTGCCAGGAGCTTAAGGGAGATCAGCAGCCCAAGCATAACATCTTATTACCCAAAAGTCAACCTACATGTAGAAGATAAACTGGTGATGATGGATAATGGCATCATTCATGTCACATTGGCAAGGCCGGAGGGCACTGTCCTTGGAATATCATATAATGGAATAGATAATGTGCTTGAAGCTCGCAACAAATTTGATGATAGAGGGTATTTTGACGTTGTTTGGAATGTACCAGGAAATCATTCTAAAGTTTGGAGAGTCTATGGGAACAAATTTTCTGTTATAGAGGCAAATGAGGATCAAGTAGAGGTTTCATTTTCAAGAACGTGGGACATGGATGGCTCAAGTCTCCCCATAAACGTTGAAATTAGGTATATATTACGTAGAGGTAGTTCAGGAGTATACATATACGCTATAGTTGAGCGTTCCGAAGGTTTTCCCGCATTGGAGATTGATCACATTAGGATCGTTTTCAAGCTACAGAAGGACAGGTTCCACTACATGGCTATAGCAGATGATAGGCAGCGAGTGATGCCAACCCCAGAAGATAGATCTGTTGGGCAACGCCTTGATTATGCTGAAGCTGTTCTAATGAATCACCCTAGTAACCCTGCACTTCAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGAGAACAAAGATAATAATCTTCATGGGTGGATTAACTTTGACACCAACTTCAATGAATCGGTGGGCTTCTGGATGATAACACCAAGTAATGAGTTCCGTAATGGTGGGCCAATCCATCAAGGCCTCACTTCTCATGTTGGCCCTGTCACTCTCAATATACTTCATACCACCCACTACGCCGGGAAGGAGATAACAATGGCATTTCAAGAAGGGGAGCCTTTCAAGAAAGTTTATGGCCCCTTTTTTGTGTATCTCAACTCTGTTTCAAGTGGCCATGATGATTCACAAGTCCTCTGGAATGATGCTAAACAACAGCTGTCTGAGGAAATCAAAAGCTGGCCCTATGATTTCCCAAAATCAGATGATTTTTTCCCACCCAATAAACGGGGAACAGTGGAAGGAAGATTGCTAATCCAAGACCGATACATCAAAGGAGGAAGGTTTCTATATGGTGACAATGCTTATGTTGGTCTGGCTCTGCCTGGAGACGTGGGATCATGGCAAAGACAAAGCAAGGGTTACCAATTCTGGACTCAAGCTGATAAGATTGGCCACTTCCAAATCAAAAATGTTGTACCGGGTGACTACAATTTGTATGCATGGGTTCCTGGCATTTTTGGAGATTACAAATTTGACACTACTATAACCATCACACCAGGATGTGTCATCCAATTGGGTTCACTAATATACATGCCTCCAAGAAATGGACCTACCATATGGGAAATTGGCATCCCTGATCGCTCTGCTGCAGAGTTCTATGTTCCAGACCCTTATCCTAACCTCATTAACCGATTATTCATTGGAAAGCCAAAACACAACTTTAGGCAATATGGATTGTGGCAACGTTACACTGAATTATATCCAAATCAGAACCTCGTTTACAATGTTGGTGTTAGTGATTATAGTAAAGATTGGTTTTATGCTCATGTTACCAGGAATATAGGAAACAACACATTTCGCCCAACGACATGGGAGATTAGATTTCATCTTCCATTTGTTCTAAGAGGAAACTACACACTGCAACTTGCCCTGGCCTCAGCCGCAAGTTCTAACTTGGTGGTTCGGTTCAATAACCAAATGGCTATTCCTCAACACTTTTCTACGGGAACAATAGGCCAAGACAACGCCATAGCGAGACATGGGATCCATGGATTGTACTGGCCTTACAACATTGAAGTACCTAGCCATCTATTGGTTGAAGGAAACAACACCATTTATCTGAGGCAGGCAAAAGGTCTAAGTCCTTTCCAAGGAGTTATGTATGACTACATCCGTTTGGAAAGACCTGAAACTTCAAGTTTAAATTGA 2046 0.4218 MKRMGLTRKSGFVLCLFGIELCFLLAFCSARSLREISSPSITSYYPKVNLHVEDKLVMMDNGIIHVTLARPEGTVLGISYNGIDNVLEARNKFDDRGYFDVVWNVPGNHSKVWRVYGNKFSVIEANEDQVEVSFSRTWDMDGSSLPINVEIRYILRRGSSGVYIYAIVERSEGFPALEIDHIRIVFKLQKDRFHYMAIADDRQRVMPTPEDRSVGQRLDYAEAVLMNHPSNPALQGEVDDKYQYSCENKDNNLHGWINFDTNFNESVGFWMITPSNEFRNGGPIHQGLTSHVGPVTLNILHTTHYAGKEITMAFQEGEPFKKVYGPFFVYLNSVSSGHDDSQVLWNDAKQQLSEEIKSWPYDFPKSDDFFPPNKRGTVEGRLLIQDRYIKGGRFLYGDNAYVGLALPGDVGSWQRQSKGYQFWTQADKIGHFQIKNVVPGDYNLYAWVPGIFGDYKFDTTITITPGCVIQLGSLIYMPPRNGPTIWEIGIPDRSAAEFYVPDPYPNLINRLFIGKPKHNFRQYGLWQRYTELYPNQNLVYNVGVSDYSKDWFYAHVTRNIGNNTFRPTTWEIRFHLPFVLRGNYTLQLALASAASSNLVVRFNNQMAIPQHFSTGTIGQDNAIARHGIHGLYWPYNIEVPSHLLVEGNNTIYLRQAKGLSPFQGVMYDYIRLERPETSSLN 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2174g00001 681 Gene3D - 52 350 IPR014718 GO:0030246
Gabi2174g00001 681 FunFam Rhamnogalacturonate lyase B 371 471 - -
Gabi2174g00001 681 CDD RGL4_M 374 474 IPR029413 -
Gabi2174g00001 681 SUPERFAMILY Starch-binding domain-like 370 472 IPR013784 GO:0030246
Gabi2174g00001 681 Gene3D - 481 673 - -
Gabi2174g00001 681 Pfam Rhamnogalacturonate lyase family 48 238 IPR010325 -
Gabi2174g00001 681 SUPERFAMILY Galactose-binding domain-like 481 673 IPR008979 -
Gabi2174g00001 681 CDD RGL4_N 50 336 - -
Gabi2174g00001 681 Gene3D - 371 471 - -
Gabi2174g00001 681 SUPERFAMILY Galactose mutarotase-like 64 344 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gabi2174g00001 681 Pfam Polysaccharide lyase family 4, domain II 398 470 IPR029413 -
Gabi2174g00001 681 Pfam Polysaccharide lyase family 4, domain III 484 672 IPR029411 -
Gabi2174g00001 681 CDD RGL4_C 486 673 - -
Gabi2174g00001 681 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2174g00001 Gabi-Chr2174 8283 15508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2174g00001 48 677 Polysaccharide Lyase AT1G09910 55.591 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2174g00001 K18195 - gmx:100792575 1077