Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2173g00027 ATGGATTCAAGCTTGACAAGGTATCGATCGGCTCCAAGTTCGTATTTTTCGAATATCATTGACCGGGAGTTTTACGAGAACGTGTTCAATCGCCCCTCGAGCCCTGAAACAGAACGAATTTTCGATCGGTTTATCAATAGTCTTGGTGGTGGTGGTGATGTTGTTGTAGATGATTCACTTACTACTCAGAATCTCTCAACTGTTCAGCAAATCGCTGTAGTGAAGGAAGAGGTTAACCAGCAATCTGAGGCTATGCCATCCATGAATAATGAACCTGTGGTTCTCCACAACCAGCAACAGCATCAACAAAGCAATATCAATCATTATAGTTCCTCTGCTCCTCAGAATTTTTATCAAAGCTCTGGACGACCACCTTTGCCAAACCAGATGAAAACTGGTCGTGGAAATAGTTCTAATCTTTTCAGGCAAAATAGCTCACCTGCGGGACTGTTTTCAAACGTTAACATTGAAACTGGATATGCTGCTGTAAGAGGCATGGGAACTTTGGGAGCTGGTAATAACCCCAGTGAGGAAGCAAACTTTTCTACTGCATCGAGGTTGAAGAATCCACCAAACTACTCGTCAGGGCTAATGTCATCAATAGCTGAAATTGGGAATAAAAGCAATACACAAAATAATCCAGAAAAAGAAGATTTTGGTGAAAGCCAGGGGAATGATTATATTCCAGGTTTCCCCGTAGCTCCATGGGATGATTCTGCAATCATGGCTGATAATATGACTGGTGTAAAAGGTTATGGAGATGATGATGTAAAACCATTTTCTGGTTTAAATGCAGCTGAAAGCCAGAATGAAACAGGAGGCCAAACTTCTGCTCCTTTGGCTCATCACTTGAGTTTGCCAAATACTTCAGCCGAAATTGCAGCCATTGAGAAGTTTCTGCAGTTATCAGATTCTGTTCCATGTAAAATTCGTGCCAAGCGGGGCTGTGCTACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGAGAATGAGGAAACTACAAGATCTCGTCCCTAACATGGACAAGCAAACAAACACCGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAAGCAAGTTCAGACTGTCGTGCTAAGTGTACGTGTTTGCACAAGCAGCAGCAATAATGGAAAAGAGTTGGAGGATACCCAATTCAGTATATGTACATATTTGTAA 1206 0.4196 MDSSLTRYRSAPSSYFSNIIDREFYENVFNRPSSPETERIFDRFINSLGGGGDVVVDDSLTTQNLSTVQQIAVVKEEVNQQSEAMPSMNNEPVVLHNQQQHQQSNINHYSSSAPQNFYQSSGRPPLPNQMKTGRGNSSNLFRQNSSPAGLFSNVNIETGYAAVRGMGTLGAGNNPSEEANFSTASRLKNPPNYSSGLMSSIAEIGNKSNTQNNPEKEDFGESQGNDYIPGFPVAPWDDSAIMADNMTGVKGYGDDDVKPFSGLNAAESQNETGGQTSAPLAHHLSLPNTSAEIAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQKQVQTVVLSVRVCTSSSNNGKELEDTQFSICTYL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2173g00027 401 MobiDBLite consensus disorder prediction 174 225 - -
Gabi2173g00027 401 Gene3D - 317 387 IPR036638 GO:0046983
Gabi2173g00027 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 366 IPR011598 GO:0046983
Gabi2173g00027 401 SMART finulus 322 372 IPR011598 GO:0046983
Gabi2173g00027 401 Pfam Helix-loop-helix DNA-binding domain 321 367 IPR011598 GO:0046983
Gabi2173g00027 401 FunFam Transcription factor bHLH130 family 317 385 - -
Gabi2173g00027 401 MobiDBLite consensus disorder prediction 174 218 - -
Gabi2173g00027 401 MobiDBLite consensus disorder prediction 96 148 - -
Gabi2173g00027 401 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 382 - -
Gabi2173g00027 401 MobiDBLite consensus disorder prediction 263 282 - -
Gabi2173g00027 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 375 IPR036638 GO:0046983
Gabi2173g00027 401 MobiDBLite consensus disorder prediction 260 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2173g00027 Gabi-Chr2173 244906 248297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2173g00027 2 384 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.447 2.92e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2173g00027 HLH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2173g00027 - - gmx:100803833 544.273